Strain Fitness in Escherichia coli BL21 around ECD_03608

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03607 and ECD_03608 are separated by 285 nucleotidesECD_03608 and ECD_03609 are separated by 14 nucleotidesECD_03609 and ECD_03610 are separated by 182 nucleotides ECD_03607: ECD_03607 - transcriptional antiterminator of the bgl operon, at 3,794,533 to 3,795,369 _03607 ECD_03608: ECD_03608 - negative regulator of PhoR/PhoB two-component regulator, at 3,795,655 to 3,796,380 _03608 ECD_03609: ECD_03609 - phosphate ABC transporter ATPase, at 3,796,395 to 3,797,168 _03609 ECD_03610: ECD_03610 - phosphate ABC transporter permease, at 3,797,351 to 3,798,241 _03610 Position (kb) 3795 3796 3797Strain fitness (log2 ratio) -2 -1 0 1at 3794.833 kb on + strand, within ECD_03607at 3795.031 kb on + strand, within ECD_03607at 3795.031 kb on + strand, within ECD_03607at 3795.032 kb on - strand, within ECD_03607at 3795.051 kb on + strand, within ECD_03607at 3795.087 kb on - strand, within ECD_03607at 3795.091 kb on - strand, within ECD_03607at 3795.091 kb on - strand, within ECD_03607at 3795.132 kb on + strand, within ECD_03607at 3795.133 kb on - strand, within ECD_03607at 3795.135 kb on + strand, within ECD_03607at 3795.136 kb on - strand, within ECD_03607at 3795.168 kb on + strand, within ECD_03607at 3795.169 kb on - strand, within ECD_03607at 3795.656 kb on + strandat 3796.418 kb on - strandat 3797.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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3,794,833 + ECD_03607 0.36 -2.0
3,795,031 + ECD_03607 0.59 -1.6
3,795,031 + ECD_03607 0.59 -1.1
3,795,032 - ECD_03607 0.60 -2.2
3,795,051 + ECD_03607 0.62 -0.3
3,795,087 - ECD_03607 0.66 -1.2
3,795,091 - ECD_03607 0.67 -2.5
3,795,091 - ECD_03607 0.67 -1.6
3,795,132 + ECD_03607 0.72 -1.4
3,795,133 - ECD_03607 0.72 +0.3
3,795,135 + ECD_03607 0.72 -0.9
3,795,136 - ECD_03607 0.72 -2.0
3,795,168 + ECD_03607 0.76 -0.9
3,795,169 - ECD_03607 0.76 -1.2
3,795,656 + -1.2
3,796,418 - -0.8
3,797,216 - -0.1

Or see this region's nucleotide sequence