Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03606 and ECD_03607 are separated by 132 nucleotides ECD_03607 and ECD_03608 are separated by 285 nucleotides
ECD_03606: ECD_03606 - fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component, at 3,792,523 to 3,794,400
_03606
ECD_03607: ECD_03607 - transcriptional antiterminator of the bgl operon, at 3,794,533 to 3,795,369
_03607
ECD_03608: ECD_03608 - negative regulator of PhoR/PhoB two-component regulator, at 3,795,655 to 3,796,380
_03608
Position (kb)
3794
3795
3796 Strain fitness (log2 ratio)
-2
-1
0
1 at 3793.651 kb on + strand, within ECD_03606 at 3793.652 kb on - strand, within ECD_03606 at 3793.652 kb on - strand, within ECD_03606 at 3793.749 kb on + strand, within ECD_03606 at 3793.764 kb on - strand, within ECD_03606 at 3793.846 kb on + strand, within ECD_03606 at 3793.885 kb on - strand, within ECD_03606 at 3793.920 kb on - strand, within ECD_03606 at 3793.975 kb on + strand, within ECD_03606 at 3793.976 kb on - strand, within ECD_03606 at 3793.979 kb on + strand, within ECD_03606 at 3793.979 kb on + strand, within ECD_03606 at 3794.031 kb on + strand, within ECD_03606 at 3794.032 kb on - strand, within ECD_03606 at 3794.032 kb on - strand, within ECD_03606 at 3794.032 kb on - strand, within ECD_03606 at 3794.208 kb on + strand, within ECD_03606 at 3794.209 kb on - strand, within ECD_03606 at 3794.212 kb on + strand, within ECD_03606 at 3794.212 kb on + strand, within ECD_03606 at 3794.213 kb on - strand at 3794.213 kb on - strand at 3794.213 kb on - strand at 3794.213 kb on - strand at 3794.251 kb on - strand at 3794.353 kb on - strand at 3794.400 kb on + strand at 3794.400 kb on + strand at 3794.833 kb on + strand, within ECD_03607 at 3795.031 kb on + strand, within ECD_03607 at 3795.031 kb on + strand, within ECD_03607 at 3795.032 kb on - strand, within ECD_03607 at 3795.051 kb on + strand, within ECD_03607 at 3795.087 kb on - strand, within ECD_03607 at 3795.091 kb on - strand, within ECD_03607 at 3795.091 kb on - strand, within ECD_03607 at 3795.132 kb on + strand, within ECD_03607 at 3795.133 kb on - strand, within ECD_03607 at 3795.135 kb on + strand, within ECD_03607 at 3795.136 kb on - strand, within ECD_03607 at 3795.168 kb on + strand, within ECD_03607 at 3795.169 kb on - strand, within ECD_03607 at 3795.656 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 3,793,651 + ECD_03606 0.60 -0.6 3,793,652 - ECD_03606 0.60 -0.6 3,793,652 - ECD_03606 0.60 -0.5 3,793,749 + ECD_03606 0.65 -0.1 3,793,764 - ECD_03606 0.66 -0.1 3,793,846 + ECD_03606 0.70 -1.2 3,793,885 - ECD_03606 0.73 -0.1 3,793,920 - ECD_03606 0.74 -1.0 3,793,975 + ECD_03606 0.77 -0.3 3,793,976 - ECD_03606 0.77 -1.0 3,793,979 + ECD_03606 0.78 -0.6 3,793,979 + ECD_03606 0.78 -0.4 3,794,031 + ECD_03606 0.80 -0.1 3,794,032 - ECD_03606 0.80 -0.3 3,794,032 - ECD_03606 0.80 -0.6 3,794,032 - ECD_03606 0.80 -0.6 3,794,208 + ECD_03606 0.90 -0.7 3,794,209 - ECD_03606 0.90 +0.5 3,794,212 + ECD_03606 0.90 -0.8 3,794,212 + ECD_03606 0.90 +0.2 3,794,213 - -0.4 3,794,213 - -0.3 3,794,213 - -0.8 3,794,213 - +0.8 3,794,251 - +0.4 3,794,353 - -0.1 3,794,400 + -0.2 3,794,400 + -1.3 3,794,833 + ECD_03607 0.36 -2.0 3,795,031 + ECD_03607 0.59 -1.6 3,795,031 + ECD_03607 0.59 -1.1 3,795,032 - ECD_03607 0.60 -2.2 3,795,051 + ECD_03607 0.62 -0.3 3,795,087 - ECD_03607 0.66 -1.2 3,795,091 - ECD_03607 0.67 -2.5 3,795,091 - ECD_03607 0.67 -1.6 3,795,132 + ECD_03607 0.72 -1.4 3,795,133 - ECD_03607 0.72 +0.3 3,795,135 + ECD_03607 0.72 -0.9 3,795,136 - ECD_03607 0.72 -2.0 3,795,168 + ECD_03607 0.76 -0.9 3,795,169 - ECD_03607 0.76 -1.2 3,795,656 + -1.2
Or see this region's nucleotide sequence