Strain Fitness in Escherichia coli BL21 around ECD_03607

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03606 and ECD_03607 are separated by 132 nucleotidesECD_03607 and ECD_03608 are separated by 285 nucleotides ECD_03606: ECD_03606 - fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component, at 3,792,523 to 3,794,400 _03606 ECD_03607: ECD_03607 - transcriptional antiterminator of the bgl operon, at 3,794,533 to 3,795,369 _03607 ECD_03608: ECD_03608 - negative regulator of PhoR/PhoB two-component regulator, at 3,795,655 to 3,796,380 _03608 Position (kb) 3794 3795 3796Strain fitness (log2 ratio) -2 -1 0 1at 3793.651 kb on + strand, within ECD_03606at 3793.652 kb on - strand, within ECD_03606at 3793.652 kb on - strand, within ECD_03606at 3793.749 kb on + strand, within ECD_03606at 3793.764 kb on - strand, within ECD_03606at 3793.846 kb on + strand, within ECD_03606at 3793.885 kb on - strand, within ECD_03606at 3793.920 kb on - strand, within ECD_03606at 3793.975 kb on + strand, within ECD_03606at 3793.976 kb on - strand, within ECD_03606at 3793.979 kb on + strand, within ECD_03606at 3793.979 kb on + strand, within ECD_03606at 3794.031 kb on + strand, within ECD_03606at 3794.032 kb on - strand, within ECD_03606at 3794.032 kb on - strand, within ECD_03606at 3794.032 kb on - strand, within ECD_03606at 3794.208 kb on + strand, within ECD_03606at 3794.209 kb on - strand, within ECD_03606at 3794.212 kb on + strand, within ECD_03606at 3794.212 kb on + strand, within ECD_03606at 3794.213 kb on - strandat 3794.213 kb on - strandat 3794.213 kb on - strandat 3794.213 kb on - strandat 3794.251 kb on - strandat 3794.353 kb on - strandat 3794.400 kb on + strandat 3794.400 kb on + strandat 3794.833 kb on + strand, within ECD_03607at 3795.031 kb on + strand, within ECD_03607at 3795.031 kb on + strand, within ECD_03607at 3795.032 kb on - strand, within ECD_03607at 3795.051 kb on + strand, within ECD_03607at 3795.087 kb on - strand, within ECD_03607at 3795.091 kb on - strand, within ECD_03607at 3795.091 kb on - strand, within ECD_03607at 3795.132 kb on + strand, within ECD_03607at 3795.133 kb on - strand, within ECD_03607at 3795.135 kb on + strand, within ECD_03607at 3795.136 kb on - strand, within ECD_03607at 3795.168 kb on + strand, within ECD_03607at 3795.169 kb on - strand, within ECD_03607at 3795.656 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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3,793,651 + ECD_03606 0.60 -0.6
3,793,652 - ECD_03606 0.60 -0.6
3,793,652 - ECD_03606 0.60 -0.5
3,793,749 + ECD_03606 0.65 -0.1
3,793,764 - ECD_03606 0.66 -0.1
3,793,846 + ECD_03606 0.70 -1.2
3,793,885 - ECD_03606 0.73 -0.1
3,793,920 - ECD_03606 0.74 -1.0
3,793,975 + ECD_03606 0.77 -0.3
3,793,976 - ECD_03606 0.77 -1.0
3,793,979 + ECD_03606 0.78 -0.6
3,793,979 + ECD_03606 0.78 -0.4
3,794,031 + ECD_03606 0.80 -0.1
3,794,032 - ECD_03606 0.80 -0.3
3,794,032 - ECD_03606 0.80 -0.6
3,794,032 - ECD_03606 0.80 -0.6
3,794,208 + ECD_03606 0.90 -0.7
3,794,209 - ECD_03606 0.90 +0.5
3,794,212 + ECD_03606 0.90 -0.8
3,794,212 + ECD_03606 0.90 +0.2
3,794,213 - -0.4
3,794,213 - -0.3
3,794,213 - -0.8
3,794,213 - +0.8
3,794,251 - +0.4
3,794,353 - -0.1
3,794,400 + -0.2
3,794,400 + -1.3
3,794,833 + ECD_03607 0.36 -2.0
3,795,031 + ECD_03607 0.59 -1.6
3,795,031 + ECD_03607 0.59 -1.1
3,795,032 - ECD_03607 0.60 -2.2
3,795,051 + ECD_03607 0.62 -0.3
3,795,087 - ECD_03607 0.66 -1.2
3,795,091 - ECD_03607 0.67 -2.5
3,795,091 - ECD_03607 0.67 -1.6
3,795,132 + ECD_03607 0.72 -1.4
3,795,133 - ECD_03607 0.72 +0.3
3,795,135 + ECD_03607 0.72 -0.9
3,795,136 - ECD_03607 0.72 -2.0
3,795,168 + ECD_03607 0.76 -0.9
3,795,169 - ECD_03607 0.76 -1.2
3,795,656 + -1.2

Or see this region's nucleotide sequence