Strain Fitness in Escherichia coli BL21 around ECD_03250

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Bdellovibrio bacteriovorus HD100_1
3,385,911	-				+0.3
3,385,913	-				+0.0
3,385,963	-				-0.0
3,385,971	-				+0.1
3,385,971	-				+0.2
3,386,025	+		ECD_03249	0.10	-3.3
3,386,026	-		ECD_03249	0.10	-1.4
3,386,026	-		ECD_03249	0.10	-1.2
3,386,026	-		ECD_03249	0.10	-1.1
3,386,415	-		ECD_03249	0.80	-1.2
3,386,539	+				-4.2
3,386,539	+				-5.1
3,386,539	+				-2.6
3,386,539	+				-2.6
3,386,539	+				-4.3
3,386,539	+				-1.5
3,386,540	-				-1.3
3,386,540	-				-2.3
3,386,540	-				-0.9
3,386,540	-				-1.3
3,386,540	-				-0.4
3,386,624	-				+0.4
3,386,690	+				-0.2
3,386,713	+				-0.7
3,386,714	-				-1.1
3,386,740	+				-0.5
3,386,794	+				+0.1
3,386,794	+				+0.2
3,386,795	-				-0.1
3,386,795	-				-0.0
3,386,795	-				+0.4
3,386,795	-				+0.1
3,386,830	+				-0.2
3,386,830	+				+0.3
3,386,831	-				-0.4
3,386,834	+				+0.4
3,386,834	+				+0.1
3,386,834	+				+0.1
3,386,835	-				-2.3
3,386,835	-				-0.9
3,386,835	-				-0.4
3,386,835	-				+0.3
3,386,835	-				-1.1
3,386,835	-				-0.7
3,386,896	-				-0.2
3,386,914	-				+0.1
3,386,914	-				-1.6
3,386,999	-				-0.6
3,387,036	+				-0.0
3,387,131	-		ECD_03250	0.13	-0.4
3,387,131	-		ECD_03250	0.13	-0.6
3,387,177	-		ECD_03250	0.15	-0.5
3,387,180	-		ECD_03250	0.15	-1.1
3,387,192	+		ECD_03250	0.16	+0.3
3,387,224	+		ECD_03250	0.18	+0.4
3,387,225	-		ECD_03250	0.18	-1.0
3,387,225	-		ECD_03250	0.18	+0.2
3,387,225	-		ECD_03250	0.18	+0.1
3,387,225	-		ECD_03250	0.18	+0.4
3,387,281	-		ECD_03250	0.20	+0.0
3,387,311	+		ECD_03250	0.22	+0.0
3,387,312	-		ECD_03250	0.22	-0.3
3,387,312	-		ECD_03250	0.22	-0.2
3,387,312	-		ECD_03250	0.22	+0.6
3,387,399	+		ECD_03250	0.26	+1.1
3,387,431	+		ECD_03250	0.27	-0.2
3,387,522	+		ECD_03250	0.32	+0.2
3,387,522	+		ECD_03250	0.32	+0.0
3,387,523	-		ECD_03250	0.32	-0.1
3,387,737	+		ECD_03250	0.42	-2.1
3,387,737	+		ECD_03250	0.42	-0.1
3,387,737	+		ECD_03250	0.42	-0.3
3,387,738	-		ECD_03250	0.42	+0.4
3,387,738	-		ECD_03250	0.42	-0.1
3,387,738	-		ECD_03250	0.42	+0.3
3,387,738	-		ECD_03250	0.42	+0.0
3,387,738	-		ECD_03250	0.42	+0.1
3,387,738	-		ECD_03250	0.42	-0.4
3,387,775	+		ECD_03250	0.43	+0.4
3,387,776	-		ECD_03250	0.43	-0.8
3,387,779	+		ECD_03250	0.44	-0.4
3,387,780	-		ECD_03250	0.44	-0.0
3,387,780	-		ECD_03250	0.44	+0.5
3,387,780	-		ECD_03250	0.44	+0.5
3,387,780	-		ECD_03250	0.44	-0.1
3,387,780	-		ECD_03250	0.44	-0.1
3,387,780	-		ECD_03250	0.44	+2.1
3,387,795	+		ECD_03250	0.44	-0.4
3,387,795	+		ECD_03250	0.44	+0.1
3,387,795	+		ECD_03250	0.44	-1.1
3,387,796	-		ECD_03250	0.44	-0.4
3,387,796	-		ECD_03250	0.44	+1.4
3,387,796	-		ECD_03250	0.44	-0.3
3,387,835	-		ECD_03250	0.46	+0.2
3,387,904	+		ECD_03250	0.49	-0.0
3,387,912	+		ECD_03250	0.50	-0.4
3,387,913	-		ECD_03250	0.50	+0.1
3,388,030	+		ECD_03250	0.55	-0.4
3,388,039	+		ECD_03250	0.56	-1.2
3,388,039	+		ECD_03250	0.56	-1.3
3,388,040	-		ECD_03250	0.56	-0.5
3,388,061	-		ECD_03250	0.57	-1.6
3,388,061	-		ECD_03250	0.57	-0.9
3,388,111	-		ECD_03250	0.59	-1.0
3,388,229	-		ECD_03250	0.65	-1.3
3,388,263	+		ECD_03250	0.66	-0.6
3,388,263	+		ECD_03250	0.66	-0.8
3,388,264	-		ECD_03250	0.66	-1.4
3,388,294	-		ECD_03250	0.68	-0.8
3,388,294	-		ECD_03250	0.68	+0.5
3,388,294	-		ECD_03250	0.68	+0.1
3,388,294	-		ECD_03250	0.68	-0.1
3,388,320	+		ECD_03250	0.69	-0.4
3,388,320	+		ECD_03250	0.69	+0.7
3,388,321	-		ECD_03250	0.69	-1.0
3,388,338	+		ECD_03250	0.70	-0.0
3,388,338	+		ECD_03250	0.70	-0.7
3,388,461	+		ECD_03250	0.75	-0.4
3,388,558	-		ECD_03250	0.80	-1.3
3,388,644	-		ECD_03250	0.84	-0.0
3,388,644	-		ECD_03250	0.84	+0.8
3,388,705	+		ECD_03250	0.87	+0.6
3,388,705	+		ECD_03250	0.87	+0.4
3,388,705	+		ECD_03250	0.87	+0.2
3,388,706	-		ECD_03250	0.87	-0.7
3,388,760	-		ECD_03250	0.89	-0.3
3,388,768	+		ECD_03250	0.90	-0.0
3,388,768	+		ECD_03250	0.90	-1.4
3,388,768	+		ECD_03250	0.90	+0.3
3,388,769	-		ECD_03250	0.90	-0.6
3,388,812	-				-0.8
3,388,834	-				-0.2
3,388,859	+				-0.6
3,388,860	-				-0.7
3,388,925	+				-0.4
3,388,925	+				+0.1
3,388,926	-				-0.3
3,388,928	+				-0.4
3,388,929	-				+0.1
3,389,008	+				-0.6
3,389,008	+				-1.5
3,389,009	-				+0.0
3,389,054	+				-1.2
3,389,055	-				-0.2
3,389,077	+				+0.1
3,389,077	+				+0.3
3,389,077	+				-0.8
3,389,077	+				+0.6
3,389,077	+				+0.4
3,389,077	+				-0.4
3,389,078	-				+0.3
3,389,078	-				+1.1
3,389,078	-				-0.4
3,389,078	-				-0.3
3,389,078	-				-0.3
3,389,081	+				-1.4
3,389,133	+		ECD_03251	0.13	+1.7
3,389,133	+		ECD_03251	0.13	-0.5
3,389,133	+		ECD_03251	0.13	-0.4
3,389,134	-		ECD_03251	0.13	+0.2
3,389,134	-		ECD_03251	0.13	-1.4
3,389,134	-		ECD_03251	0.13	-1.2
3,389,134	-		ECD_03251	0.13	+0.2
3,389,184	-		ECD_03251	0.20	+0.2
3,389,205	+		ECD_03251	0.23	+0.6
3,389,205	+		ECD_03251	0.23	+0.0
3,389,205	+		ECD_03251	0.23	-0.3
3,389,205	+		ECD_03251	0.23	-0.4
3,389,205	+		ECD_03251	0.23	-0.4
3,389,206	-		ECD_03251	0.23	-0.5
3,389,206	-		ECD_03251	0.23	+0.1
3,389,207	+		ECD_03251	0.24	-0.6
3,389,208	-		ECD_03251	0.24	-0.9
3,389,220	+		ECD_03251	0.26	-0.4
3,389,231	-		ECD_03251	0.27	-0.5
3,389,237	+		ECD_03251	0.28	-0.0
3,389,237	+		ECD_03251	0.28	-0.9
3,389,238	-		ECD_03251	0.28	+0.1
3,389,243	-		ECD_03251	0.29	-0.8
3,389,243	-		ECD_03251	0.29	+0.2
3,389,251	-		ECD_03251	0.30	-1.2
3,389,262	+		ECD_03251	0.32	-0.8
3,389,263	-		ECD_03251	0.32	-0.4
3,389,288	+		ECD_03251	0.36	+0.5
3,389,288	+		ECD_03251	0.36	-1.2
3,389,339	+		ECD_03251	0.43	-0.1
3,389,340	-		ECD_03251	0.43	-0.6
3,389,340	-		ECD_03251	0.43	-0.3
3,389,340	-		ECD_03251	0.43	-0.9
3,389,376	-		ECD_03251	0.49	-0.8
3,389,435	+		ECD_03251	0.58	-0.1
3,389,436	-		ECD_03251	0.58	-0.5
3,389,461	+		ECD_03251	0.62	+0.3
3,389,461	+		ECD_03251	0.62	-0.6
3,389,464	+		ECD_03251	0.62	-0.7
3,389,531	+		ECD_03251	0.72	+1.0
3,389,562	-		ECD_03251	0.77	-1.6
3,389,661	+				-0.4
3,389,764	-				-0.4
3,389,839	+		ECD_03252	0.28	+0.3
3,389,839	+		ECD_03252	0.28	+0.3
3,389,840	-		ECD_03252	0.28	-0.5
3,389,930	+		ECD_03252	0.50	+0.2
3,389,980	+		ECD_03252	0.63	+0.5