Strain Fitness in Escherichia coli BL21 around ECD_03228

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03227 and ECD_03228 overlap by 82 nucleotidesECD_03228 and ECD_03229 are separated by 539 nucleotides ECD_03227: ECD_03227 - IS1 protein InsB, at 3,365,173 to 3,365,676 _03227 ECD_03228: ECD_03228 - IS1 protein InsA, at 3,365,595 to 3,365,870 _03228 ECD_03229: ECD_03229 - inner membrane protein, at 3,366,410 to 3,367,714 _03229 Position (kb) 3365 3366Strain fitness (log2 ratio) -1 0 1at 3364.664 kb on - strandat 3364.684 kb on + strandat 3364.977 kb on - strandat 3365.031 kb on + strandat 3365.032 kb on - strandat 3365.104 kb on + strandat 3365.104 kb on + strandat 3365.104 kb on + strandat 3365.105 kb on - strandat 3365.105 kb on - strandat 3365.105 kb on - strandat 3365.105 kb on - strandat 3365.161 kb on - strandat 3365.895 kb on + strandat 3365.895 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.948 kb on - strandat 3365.948 kb on - strandat 3366.051 kb on - strandat 3366.053 kb on + strandat 3366.279 kb on + strandat 3366.279 kb on + strandat 3366.280 kb on - strandat 3366.280 kb on - strandat 3366.280 kb on - strandat 3366.294 kb on - strandat 3366.365 kb on + strandat 3366.398 kb on + strandat 3366.398 kb on + strandat 3366.399 kb on - strandat 3366.399 kb on - strandat 3366.412 kb on - strandat 3366.470 kb on + strandat 3366.532 kb on - strandat 3366.560 kb on - strand, within ECD_03229at 3366.623 kb on - strand, within ECD_03229at 3366.623 kb on - strand, within ECD_03229at 3366.721 kb on + strand, within ECD_03229at 3366.769 kb on - strand, within ECD_03229at 3366.791 kb on - strand, within ECD_03229at 3366.807 kb on + strand, within ECD_03229at 3366.808 kb on - strand, within ECD_03229

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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3,364,664 - -0.1
3,364,684 + -1.6
3,364,977 - -1.7
3,365,031 + -1.0
3,365,032 - +0.0
3,365,104 + -0.8
3,365,104 + -0.1
3,365,104 + -0.1
3,365,105 - +1.5
3,365,105 - +0.1
3,365,105 - +0.1
3,365,105 - -0.1
3,365,161 - +0.3
3,365,895 + -1.0
3,365,895 + -0.0
3,365,947 + +0.2
3,365,947 + -0.7
3,365,947 + -0.1
3,365,947 + +0.3
3,365,947 + -0.8
3,365,948 - -0.3
3,365,948 - -0.1
3,366,051 - +0.0
3,366,053 + +0.3
3,366,279 + -0.8
3,366,279 + -0.4
3,366,280 - -0.7
3,366,280 - +0.3
3,366,280 - -0.8
3,366,294 - -0.1
3,366,365 + -0.7
3,366,398 + -0.5
3,366,398 + -0.3
3,366,399 - -0.2
3,366,399 - -0.4
3,366,412 - +0.1
3,366,470 + -1.0
3,366,532 - +0.5
3,366,560 - ECD_03229 0.11 -0.6
3,366,623 - ECD_03229 0.16 -0.4
3,366,623 - ECD_03229 0.16 -0.7
3,366,721 + ECD_03229 0.24 -0.9
3,366,769 - ECD_03229 0.28 +0.6
3,366,791 - ECD_03229 0.29 -0.3
3,366,807 + ECD_03229 0.30 -0.3
3,366,808 - ECD_03229 0.30 +0.2

Or see this region's nucleotide sequence