Strain Fitness in Escherichia coli BL21 around ECD_02945

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Bdellovibrio bacteriovorus HD100_1
3,087,739	+		ECD_02944	0.19	-2.3
3,087,739	+		ECD_02944	0.19	-1.3
3,087,740	-		ECD_02944	0.20	-1.7
3,087,740	-		ECD_02944	0.20	-0.2
3,087,749	-		ECD_02944	0.20	-1.1
3,087,752	+		ECD_02944	0.21	-2.8
3,087,752	+		ECD_02944	0.21	-1.0
3,087,752	+		ECD_02944	0.21	+0.7
3,087,752	+		ECD_02944	0.21	-1.7
3,087,752	+		ECD_02944	0.21	-1.6
3,087,752	+		ECD_02944	0.21	-1.4
3,087,752	+		ECD_02944	0.21	-1.1
3,087,752	+		ECD_02944	0.21	-0.6
3,087,753	-		ECD_02944	0.21	-1.6
3,087,753	-		ECD_02944	0.21	-1.8
3,087,759	-		ECD_02944	0.21	+0.7
3,087,788	+		ECD_02944	0.24	-1.8
3,087,789	-		ECD_02944	0.24	-0.8
3,087,792	-		ECD_02944	0.25	+0.2
3,087,873	+		ECD_02944	0.33	-0.7
3,087,883	+		ECD_02944	0.34	-1.3
3,087,903	+		ECD_02944	0.36	+0.2
3,087,903	+		ECD_02944	0.36	-1.8
3,087,903	+		ECD_02944	0.36	-1.0
3,087,961	+		ECD_02944	0.42	-1.0
3,087,961	+		ECD_02944	0.42	-0.5
3,087,962	-		ECD_02944	0.42	-0.6
3,087,962	-		ECD_02944	0.42	-1.5
3,087,962	-		ECD_02944	0.42	-1.0
3,087,962	-		ECD_02944	0.42	-0.5
3,088,052	+		ECD_02944	0.51	-0.4
3,088,052	+		ECD_02944	0.51	-0.8
3,088,052	+		ECD_02944	0.51	-2.0
3,088,053	-		ECD_02944	0.51	-1.5
3,088,053	-		ECD_02944	0.51	-2.2
3,088,053	-		ECD_02944	0.51	-0.8
3,088,053	-		ECD_02944	0.51	-0.9
3,088,053	-		ECD_02944	0.51	-1.1
3,088,055	-		ECD_02944	0.52	-1.0
3,088,076	-		ECD_02944	0.54	-0.8
3,088,165	-		ECD_02944	0.63	-2.7
3,088,211	+		ECD_02944	0.67	-0.4
3,088,486	-				-2.3
3,088,486	-				-3.3
3,088,669	+				-1.6
3,088,669	+				+0.2
3,088,669	+				-1.8
3,088,808	-				+0.6
3,088,915	-				+0.1
3,088,934	-				-0.5
3,088,934	-				-0.0
3,088,934	-				+1.2
3,088,936	+				+0.6
3,088,982	+				-0.2
3,088,984	+				-0.1
3,088,985	-				-0.6
3,089,060	-		ECD_02945	0.11	-0.9
3,089,138	+		ECD_02945	0.14	-0.1
3,089,138	+		ECD_02945	0.14	-0.2
3,089,139	-		ECD_02945	0.14	-0.1
3,089,139	-		ECD_02945	0.14	-0.8
3,089,139	-		ECD_02945	0.14	-0.6
3,089,153	+		ECD_02945	0.14	+0.0
3,089,153	+		ECD_02945	0.14	-0.1
3,089,153	+		ECD_02945	0.14	+0.7
3,089,154	-		ECD_02945	0.14	-1.0
3,089,264	-		ECD_02945	0.18	-1.7
3,089,264	-		ECD_02945	0.18	+0.3
3,089,267	+		ECD_02945	0.18	-0.2
3,089,267	+		ECD_02945	0.18	+0.2
3,089,268	-		ECD_02945	0.18	+0.2
3,089,268	-		ECD_02945	0.18	-0.4
3,089,284	+		ECD_02945	0.18	-0.9
3,089,284	+		ECD_02945	0.18	-0.5
3,089,284	+		ECD_02945	0.18	+0.2
3,089,284	+		ECD_02945	0.18	-0.1
3,089,285	-		ECD_02945	0.18	+0.2
3,089,285	-		ECD_02945	0.18	-0.6
3,089,345	-		ECD_02945	0.20	-0.1
3,089,365	+		ECD_02945	0.21	-1.2
3,089,384	+		ECD_02945	0.22	-0.9
3,089,385	-		ECD_02945	0.22	-0.6
3,089,385	-		ECD_02945	0.22	-0.7
3,089,460	-		ECD_02945	0.24	-0.8
3,089,462	-		ECD_02945	0.24	-0.5
3,089,589	-		ECD_02945	0.28	-0.6
3,089,712	-		ECD_02945	0.32	-0.6
3,089,864	+		ECD_02945	0.37	-0.2
3,089,878	+		ECD_02945	0.38	-1.2
3,089,879	-		ECD_02945	0.38	-0.2
3,089,882	+		ECD_02945	0.38	+0.4
3,089,882	+		ECD_02945	0.38	+0.4
3,089,883	-		ECD_02945	0.38	+0.2
3,089,883	-		ECD_02945	0.38	-0.3
3,089,932	+		ECD_02945	0.39	+0.9
3,089,933	-		ECD_02945	0.39	+1.1
3,089,953	+		ECD_02945	0.40	-1.2
3,090,093	-		ECD_02945	0.45	-0.8
3,090,093	-		ECD_02945	0.45	+0.8
3,090,166	+		ECD_02945	0.47	+1.5
3,090,169	+		ECD_02945	0.47	+0.2
3,090,169	+		ECD_02945	0.47	-0.3
3,090,170	-		ECD_02945	0.47	-0.9
3,090,170	-		ECD_02945	0.47	-0.7
3,090,182	+		ECD_02945	0.47	-2.3
3,090,182	+		ECD_02945	0.47	-2.3
3,090,183	-		ECD_02945	0.47	-0.1
3,090,183	-		ECD_02945	0.47	-1.4
3,090,251	+		ECD_02945	0.50	-2.3
3,090,252	-		ECD_02945	0.50	-0.4
3,090,252	-		ECD_02945	0.50	-0.7
3,090,293	+		ECD_02945	0.51	+0.2
3,090,308	+		ECD_02945	0.52	-1.2
3,090,308	+		ECD_02945	0.52	-0.1
3,090,308	+		ECD_02945	0.52	-0.2
3,090,308	+		ECD_02945	0.52	-0.7
3,090,309	-		ECD_02945	0.52	-1.1
3,090,309	-		ECD_02945	0.52	-2.3
3,090,309	-		ECD_02945	0.52	+0.2
3,090,309	-		ECD_02945	0.52	-0.4
3,090,309	-		ECD_02945	0.52	-0.3
3,090,311	-		ECD_02945	0.52	-1.1
3,090,335	+		ECD_02945	0.52	+0.5
3,090,335	+		ECD_02945	0.52	-0.5
3,090,335	+		ECD_02945	0.52	-0.9
3,090,335	+		ECD_02945	0.52	-0.6
3,090,336	-		ECD_02945	0.52	+0.7
3,090,336	-		ECD_02945	0.52	-1.1
3,090,434	+		ECD_02945	0.56	+0.2
3,090,434	+		ECD_02945	0.56	-0.8
3,090,434	+		ECD_02945	0.56	-0.6
3,090,435	-		ECD_02945	0.56	-0.5
3,090,435	-		ECD_02945	0.56	-0.4
3,090,436	+		ECD_02945	0.56	+0.3
3,090,596	+		ECD_02945	0.61	-1.5
3,090,652	+		ECD_02945	0.63	-1.3
3,090,739	+		ECD_02945	0.65	-0.8
3,090,787	+		ECD_02945	0.67	-0.0
3,090,787	+		ECD_02945	0.67	+0.3
3,090,797	+		ECD_02945	0.67	-0.5
3,090,797	+		ECD_02945	0.67	-0.3
3,090,850	+		ECD_02945	0.69	+0.4
3,090,850	+		ECD_02945	0.69	-0.6
3,091,101	+		ECD_02945	0.77	-1.1
3,091,184	+		ECD_02945	0.80	-0.8
3,091,184	+		ECD_02945	0.80	-0.4
3,091,184	+		ECD_02945	0.80	-0.9
3,091,185	-		ECD_02945	0.80	-0.7
3,091,185	-		ECD_02945	0.80	+0.3
3,091,185	-		ECD_02945	0.80	+1.2
3,091,320	-		ECD_02945	0.84	+0.2
3,091,320	-		ECD_02945	0.84	-0.6
3,091,343	+		ECD_02945	0.85	-1.1
3,091,375	+		ECD_02945	0.86	-0.1
3,091,412	+		ECD_02945	0.87	-1.0
3,091,413	-		ECD_02945	0.87	-0.6
3,091,435	+		ECD_02945	0.88	-0.6
3,091,513	+				-2.0
3,091,532	+				-1.6
3,091,532	+				-0.4
3,091,532	+				-1.4
3,091,533	-				-1.1
3,091,533	-				-0.1
3,091,533	-				-0.2
3,091,534	+				-1.3
3,091,568	-				-0.2
3,091,692	-				-0.8
3,091,692	-				+0.1
3,091,699	+				-1.4
3,091,700	-				+0.2
3,091,751	+				+0.2
3,091,752	-				+0.1
3,091,823	+				-0.3
3,091,823	+				-1.0
3,091,824	-				+0.2
3,091,824	-				-0.4
3,091,824	-				-0.5
3,091,843	+				+0.9
3,091,943	-		ECD_02946	0.31	-0.2
3,092,011	+		ECD_02946	0.46	-1.1
3,092,337	-				+0.1
3,092,337	-				-1.0
3,092,468	+		ECD_02947	0.11	-3.1
3,092,573	+		ECD_02947	0.18	-1.2
3,092,577	-		ECD_02947	0.18	-1.7
3,092,585	+		ECD_02947	0.19	-1.7
3,092,589	+		ECD_02947	0.19	-1.7
3,092,673	+		ECD_02947	0.25	-0.6
3,092,673	+		ECD_02947	0.25	-0.7
3,092,674	-		ECD_02947	0.25	-2.1
3,092,675	+		ECD_02947	0.25	-0.6
3,092,675	+		ECD_02947	0.25	-1.3
3,092,708	+		ECD_02947	0.27	-0.8