Strain Fitness in Escherichia coli BL21 around ECD_02826

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02824 and ECD_02825 are separated by 28 nucleotidesECD_02825 and ECD_02826 are separated by 17 nucleotidesECD_02826 and ECD_02827 are separated by 208 nucleotidesECD_02827 and ECD_02828 are separated by 14 nucleotides ECD_02823: ECD_02823 - IS1 protein InsB, at 2,957,307 to 2,957,810 _02823 ECD_02824: ECD_02824 - IS1 protein InsA, at 2,957,729 to 2,958,004 _02824 ECD_02825: ECD_02825 - Pyrophosphorylase, at 2,958,033 to 2,958,755 _02825 ECD_02826: ECD_02826 - hypothetical protein, at 2,958,773 to 2,960,149 _02826 ECD_02827: ECD_02827 - Polysialic acid transport ATP-binding KpsT, at 2,960,358 to 2,961,017 _02827 ECD_02828: ECD_02828 - Polysialic acid transport protein kpsM, at 2,961,032 to 2,961,808 _02828 Position (kb) 2958 2959 2960 2961Strain fitness (log2 ratio) -2 -1 0 1at 2958.073 kb on - strandat 2958.098 kb on + strandat 2958.099 kb on - strandat 2958.247 kb on - strand, within ECD_02825at 2958.251 kb on + strand, within ECD_02825at 2959.256 kb on - strand, within ECD_02826at 2960.980 kb on + strandat 2961.093 kb on - strandat 2961.115 kb on - strand, within ECD_02828at 2961.142 kb on - strand, within ECD_02828

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,958,073 - +0.4
2,958,098 + +0.1
2,958,099 - +0.6
2,958,247 - ECD_02825 0.30 -1.4
2,958,251 + ECD_02825 0.30 -2.1
2,959,256 - ECD_02826 0.35 -0.4
2,960,980 + +0.4
2,961,093 - +0.1
2,961,115 - ECD_02828 0.11 +0.5
2,961,142 - ECD_02828 0.14 +0.7

Or see this region's nucleotide sequence