Strain Fitness in Escherichia coli BL21 around ECD_02820

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02819 and ECD_02820 are separated by 253 nucleotidesECD_02820 and ECD_02821 are separated by 61 nucleotides ECD_02819: ECD_02819 - KpsS protein, at 2,952,412 to 2,953,644 _02819 ECD_02820: ECD_02820 - hypothetical protein, at 2,953,898 to 2,954,830 _02820 ECD_02821: ECD_02821 - hypothetical protein, at 2,954,892 to 2,956,031 _02821 Position (kb) 2953 2954 2955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2952.899 kb on + strand, within ECD_02819at 2952.899 kb on + strand, within ECD_02819at 2952.899 kb on + strand, within ECD_02819at 2952.917 kb on - strand, within ECD_02819at 2952.919 kb on + strand, within ECD_02819at 2953.093 kb on + strand, within ECD_02819at 2953.094 kb on - strand, within ECD_02819at 2953.094 kb on - strand, within ECD_02819at 2953.149 kb on + strand, within ECD_02819at 2953.167 kb on + strand, within ECD_02819at 2953.167 kb on + strand, within ECD_02819at 2953.468 kb on - strand, within ECD_02819at 2954.663 kb on + strand, within ECD_02820

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,952,899 + ECD_02819 0.39 -0.5
2,952,899 + ECD_02819 0.39 +1.8
2,952,899 + ECD_02819 0.39 -0.4
2,952,917 - ECD_02819 0.41 -2.6
2,952,919 + ECD_02819 0.41 -0.2
2,953,093 + ECD_02819 0.55 -1.1
2,953,094 - ECD_02819 0.55 -2.7
2,953,094 - ECD_02819 0.55 -0.3
2,953,149 + ECD_02819 0.60 -3.3
2,953,167 + ECD_02819 0.61 -0.6
2,953,167 + ECD_02819 0.61 -2.2
2,953,468 - ECD_02819 0.86 -0.2
2,954,663 + ECD_02820 0.82 -3.2

Or see this region's nucleotide sequence