Strain Fitness in Escherichia coli BL21 around ECD_02756

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02755 and ECD_02756 are separated by 357 nucleotidesECD_02756 and ECD_02757 are separated by 214 nucleotides ECD_02755: ECD_02755 - mechanosensitive channel protein, small conductance, at 2,899,805 to 2,900,665 _02755 ECD_02756: ECD_02756 - fructose-bisphosphate aldolase, class II, at 2,901,023 to 2,902,102 _02756 ECD_02757: ECD_02757 - phosphoglycerate kinase, at 2,902,317 to 2,903,480 _02757 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2900.044 kb on + strand, within ECD_02755at 2900.045 kb on - strand, within ECD_02755at 2900.085 kb on + strand, within ECD_02755at 2900.085 kb on + strand, within ECD_02755at 2900.086 kb on - strand, within ECD_02755at 2900.138 kb on - strand, within ECD_02755at 2900.138 kb on - strand, within ECD_02755at 2900.141 kb on - strand, within ECD_02755at 2900.141 kb on - strand, within ECD_02755at 2900.143 kb on + strand, within ECD_02755at 2900.179 kb on + strand, within ECD_02755at 2900.262 kb on + strand, within ECD_02755at 2900.262 kb on + strand, within ECD_02755at 2900.262 kb on + strand, within ECD_02755at 2900.263 kb on - strand, within ECD_02755at 2900.297 kb on + strand, within ECD_02755at 2900.298 kb on - strand, within ECD_02755at 2900.298 kb on - strand, within ECD_02755at 2900.351 kb on + strand, within ECD_02755at 2900.352 kb on - strand, within ECD_02755at 2900.352 kb on - strand, within ECD_02755at 2900.352 kb on - strand, within ECD_02755at 2900.352 kb on - strand, within ECD_02755at 2900.352 kb on - strand, within ECD_02755at 2900.352 kb on - strand, within ECD_02755at 2900.370 kb on - strand, within ECD_02755at 2900.370 kb on - strand, within ECD_02755at 2900.451 kb on - strand, within ECD_02755at 2900.587 kb on - strandat 2900.592 kb on - strandat 2900.592 kb on - strandat 2900.613 kb on - strandat 2900.613 kb on - strandat 2900.637 kb on - strandat 2900.702 kb on + strandat 2900.703 kb on - strandat 2900.747 kb on + strandat 2900.767 kb on + strandat 2900.840 kb on + strandat 2900.840 kb on + strandat 2901.005 kb on + strandat 2901.005 kb on + strandat 2901.020 kb on - strandat 2901.020 kb on - strandat 2902.132 kb on - strandat 2902.132 kb on - strandat 2902.132 kb on - strandat 2902.132 kb on - strandat 2902.141 kb on - strandat 2902.360 kb on - strandat 2902.360 kb on - strandat 2902.360 kb on - strandat 2902.360 kb on - strandat 2902.360 kb on - strandat 2902.360 kb on - strandat 2902.365 kb on - strandat 2902.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,900,044 + ECD_02755 0.28 +0.4
2,900,045 - ECD_02755 0.28 -0.9
2,900,085 + ECD_02755 0.33 -3.1
2,900,085 + ECD_02755 0.33 +1.1
2,900,086 - ECD_02755 0.33 -3.1
2,900,138 - ECD_02755 0.39 -1.8
2,900,138 - ECD_02755 0.39 -0.8
2,900,141 - ECD_02755 0.39 -0.9
2,900,141 - ECD_02755 0.39 -1.4
2,900,143 + ECD_02755 0.39 -1.6
2,900,179 + ECD_02755 0.43 -0.6
2,900,262 + ECD_02755 0.53 -1.4
2,900,262 + ECD_02755 0.53 -0.2
2,900,262 + ECD_02755 0.53 -1.5
2,900,263 - ECD_02755 0.53 +0.3
2,900,297 + ECD_02755 0.57 -1.2
2,900,298 - ECD_02755 0.57 -0.3
2,900,298 - ECD_02755 0.57 -2.2
2,900,351 + ECD_02755 0.63 -1.0
2,900,352 - ECD_02755 0.64 -0.1
2,900,352 - ECD_02755 0.64 +0.2
2,900,352 - ECD_02755 0.64 -0.6
2,900,352 - ECD_02755 0.64 +0.0
2,900,352 - ECD_02755 0.64 +1.1
2,900,352 - ECD_02755 0.64 -0.6
2,900,370 - ECD_02755 0.66 +1.8
2,900,370 - ECD_02755 0.66 -1.8
2,900,451 - ECD_02755 0.75 +0.5
2,900,587 - -2.2
2,900,592 - -1.0
2,900,592 - -1.4
2,900,613 - -0.2
2,900,613 - +0.4
2,900,637 - -2.7
2,900,702 + +0.9
2,900,703 - +0.5
2,900,747 + -0.0
2,900,767 + -2.0
2,900,840 + -0.4
2,900,840 + -0.1
2,901,005 + -1.1
2,901,005 + +0.8
2,901,020 - +0.1
2,901,020 - +0.7
2,902,132 - +1.3
2,902,132 - +0.5
2,902,132 - +1.3
2,902,132 - +1.0
2,902,141 - -0.2
2,902,360 - +0.4
2,902,360 - +1.2
2,902,360 - +0.5
2,902,360 - -0.4
2,902,360 - +0.7
2,902,360 - +1.2
2,902,365 - -1.2
2,902,365 - -1.1

Or see this region's nucleotide sequence