Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02471 and ECD_02472 are separated by 102 nucleotides ECD_02472 and ECD_02473 are separated by 55 nucleotides ECD_02473 and ECD_02474 are separated by 304 nucleotides
ECD_02471: ECD_02471 - putative DNA-binding transcriptional regulator, at 2,581,039 to 2,581,920
_02471
ECD_02472: ECD_02472 - cysteine and O-acetylserine exporter, at 2,582,023 to 2,582,610
_02472
ECD_02473: ECD_02473 - autonomous glycyl radical cofactor, at 2,582,666 to 2,583,049
_02473
ECD_02474: ECD_02474 - uracil-DNA-glycosylase, at 2,583,354 to 2,584,043
_02474
Position (kb)
2582
2583 Strain fitness (log2 ratio)
-2
-1
0
1 at 2581.265 kb on - strand, within ECD_02471 at 2581.265 kb on - strand, within ECD_02471 at 2581.265 kb on - strand, within ECD_02471 at 2581.265 kb on - strand, within ECD_02471 at 2581.266 kb on + strand, within ECD_02471 at 2581.267 kb on - strand, within ECD_02471 at 2581.267 kb on - strand, within ECD_02471 at 2581.267 kb on - strand, within ECD_02471 at 2581.363 kb on - strand, within ECD_02471 at 2581.372 kb on - strand, within ECD_02471 at 2581.485 kb on - strand, within ECD_02471 at 2581.485 kb on - strand, within ECD_02471 at 2581.536 kb on - strand, within ECD_02471 at 2581.716 kb on - strand, within ECD_02471 at 2581.781 kb on - strand, within ECD_02471 at 2581.840 kb on - strand at 2582.017 kb on + strand at 2582.057 kb on - strand at 2582.074 kb on - strand at 2582.107 kb on - strand, within ECD_02472 at 2582.107 kb on - strand, within ECD_02472 at 2582.115 kb on + strand, within ECD_02472 at 2582.115 kb on + strand, within ECD_02472 at 2582.115 kb on + strand, within ECD_02472 at 2582.115 kb on + strand, within ECD_02472 at 2582.116 kb on - strand, within ECD_02472 at 2582.139 kb on + strand, within ECD_02472 at 2582.186 kb on + strand, within ECD_02472 at 2582.266 kb on + strand, within ECD_02472 at 2582.266 kb on + strand, within ECD_02472 at 2582.266 kb on + strand, within ECD_02472 at 2582.266 kb on + strand, within ECD_02472 at 2582.267 kb on - strand, within ECD_02472 at 2582.268 kb on + strand, within ECD_02472 at 2582.268 kb on + strand, within ECD_02472 at 2582.268 kb on + strand, within ECD_02472 at 2582.269 kb on - strand, within ECD_02472 at 2582.389 kb on + strand, within ECD_02472 at 2582.390 kb on - strand, within ECD_02472 at 2582.543 kb on - strand, within ECD_02472 at 2582.595 kb on - strand at 2582.649 kb on - strand at 2582.661 kb on - strand at 2582.661 kb on - strand at 2582.668 kb on - strand at 2582.789 kb on - strand, within ECD_02473 at 2582.913 kb on - strand, within ECD_02473 at 2583.044 kb on - strand at 2583.128 kb on - strand at 2583.129 kb on + strand at 2583.129 kb on + strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.131 kb on + strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.318 kb on + strand at 2583.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,581,265 - ECD_02471 0.26 -0.5 2,581,265 - ECD_02471 0.26 -1.5 2,581,265 - ECD_02471 0.26 +0.9 2,581,265 - ECD_02471 0.26 +0.7 2,581,266 + ECD_02471 0.26 -2.4 2,581,267 - ECD_02471 0.26 -0.4 2,581,267 - ECD_02471 0.26 +0.3 2,581,267 - ECD_02471 0.26 -0.3 2,581,363 - ECD_02471 0.37 -0.3 2,581,372 - ECD_02471 0.38 -0.8 2,581,485 - ECD_02471 0.51 -1.8 2,581,485 - ECD_02471 0.51 -0.4 2,581,536 - ECD_02471 0.56 +0.5 2,581,716 - ECD_02471 0.77 -1.7 2,581,781 - ECD_02471 0.84 +0.9 2,581,840 - +0.3 2,582,017 + -1.7 2,582,057 - -0.8 2,582,074 - +0.3 2,582,107 - ECD_02472 0.14 +0.2 2,582,107 - ECD_02472 0.14 +0.3 2,582,115 + ECD_02472 0.16 -0.3 2,582,115 + ECD_02472 0.16 +0.6 2,582,115 + ECD_02472 0.16 -0.4 2,582,115 + ECD_02472 0.16 +0.4 2,582,116 - ECD_02472 0.16 +1.3 2,582,139 + ECD_02472 0.20 +0.6 2,582,186 + ECD_02472 0.28 -0.2 2,582,266 + ECD_02472 0.41 -0.3 2,582,266 + ECD_02472 0.41 -0.8 2,582,266 + ECD_02472 0.41 +0.3 2,582,266 + ECD_02472 0.41 -0.1 2,582,267 - ECD_02472 0.41 -1.1 2,582,268 + ECD_02472 0.42 -0.5 2,582,268 + ECD_02472 0.42 -0.7 2,582,268 + ECD_02472 0.42 -0.4 2,582,269 - ECD_02472 0.42 -2.4 2,582,389 + ECD_02472 0.62 -0.0 2,582,390 - ECD_02472 0.62 -0.8 2,582,543 - ECD_02472 0.88 +0.3 2,582,595 - -1.2 2,582,649 - -1.3 2,582,661 - +0.3 2,582,661 - -0.4 2,582,668 - +1.2 2,582,789 - ECD_02473 0.32 -1.3 2,582,913 - ECD_02473 0.64 -2.1 2,583,044 - -1.8 2,583,128 - +0.5 2,583,129 + -0.8 2,583,129 + -2.2 2,583,130 - +0.7 2,583,130 - +0.7 2,583,130 - +0.7 2,583,130 - +0.2 2,583,130 - -0.7 2,583,130 - +0.9 2,583,131 + -2.4 2,583,132 - -0.1 2,583,132 - +0.4 2,583,132 - -0.0 2,583,132 - +1.2 2,583,132 - +0.1 2,583,318 + -2.2 2,583,323 + +1.5
Or see this region's nucleotide sequence