Strain Fitness in Escherichia coli BL21 around ECD_02472

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02471 and ECD_02472 are separated by 102 nucleotidesECD_02472 and ECD_02473 are separated by 55 nucleotidesECD_02473 and ECD_02474 are separated by 304 nucleotides ECD_02471: ECD_02471 - putative DNA-binding transcriptional regulator, at 2,581,039 to 2,581,920 _02471 ECD_02472: ECD_02472 - cysteine and O-acetylserine exporter, at 2,582,023 to 2,582,610 _02472 ECD_02473: ECD_02473 - autonomous glycyl radical cofactor, at 2,582,666 to 2,583,049 _02473 ECD_02474: ECD_02474 - uracil-DNA-glycosylase, at 2,583,354 to 2,584,043 _02474 Position (kb) 2582 2583Strain fitness (log2 ratio) -2 -1 0 1at 2581.265 kb on - strand, within ECD_02471at 2581.265 kb on - strand, within ECD_02471at 2581.265 kb on - strand, within ECD_02471at 2581.265 kb on - strand, within ECD_02471at 2581.266 kb on + strand, within ECD_02471at 2581.267 kb on - strand, within ECD_02471at 2581.267 kb on - strand, within ECD_02471at 2581.267 kb on - strand, within ECD_02471at 2581.363 kb on - strand, within ECD_02471at 2581.372 kb on - strand, within ECD_02471at 2581.485 kb on - strand, within ECD_02471at 2581.485 kb on - strand, within ECD_02471at 2581.536 kb on - strand, within ECD_02471at 2581.716 kb on - strand, within ECD_02471at 2581.781 kb on - strand, within ECD_02471at 2581.840 kb on - strandat 2582.017 kb on + strandat 2582.057 kb on - strandat 2582.074 kb on - strandat 2582.107 kb on - strand, within ECD_02472at 2582.107 kb on - strand, within ECD_02472at 2582.115 kb on + strand, within ECD_02472at 2582.115 kb on + strand, within ECD_02472at 2582.115 kb on + strand, within ECD_02472at 2582.115 kb on + strand, within ECD_02472at 2582.116 kb on - strand, within ECD_02472at 2582.139 kb on + strand, within ECD_02472at 2582.186 kb on + strand, within ECD_02472at 2582.266 kb on + strand, within ECD_02472at 2582.266 kb on + strand, within ECD_02472at 2582.266 kb on + strand, within ECD_02472at 2582.266 kb on + strand, within ECD_02472at 2582.267 kb on - strand, within ECD_02472at 2582.268 kb on + strand, within ECD_02472at 2582.268 kb on + strand, within ECD_02472at 2582.268 kb on + strand, within ECD_02472at 2582.269 kb on - strand, within ECD_02472at 2582.389 kb on + strand, within ECD_02472at 2582.390 kb on - strand, within ECD_02472at 2582.543 kb on - strand, within ECD_02472at 2582.595 kb on - strandat 2582.649 kb on - strandat 2582.661 kb on - strandat 2582.661 kb on - strandat 2582.668 kb on - strandat 2582.789 kb on - strand, within ECD_02473at 2582.913 kb on - strand, within ECD_02473at 2583.044 kb on - strandat 2583.128 kb on - strandat 2583.129 kb on + strandat 2583.129 kb on + strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.131 kb on + strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.318 kb on + strandat 2583.323 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,581,265 - ECD_02471 0.26 -0.5
2,581,265 - ECD_02471 0.26 -1.5
2,581,265 - ECD_02471 0.26 +0.9
2,581,265 - ECD_02471 0.26 +0.7
2,581,266 + ECD_02471 0.26 -2.4
2,581,267 - ECD_02471 0.26 -0.4
2,581,267 - ECD_02471 0.26 +0.3
2,581,267 - ECD_02471 0.26 -0.3
2,581,363 - ECD_02471 0.37 -0.3
2,581,372 - ECD_02471 0.38 -0.8
2,581,485 - ECD_02471 0.51 -1.8
2,581,485 - ECD_02471 0.51 -0.4
2,581,536 - ECD_02471 0.56 +0.5
2,581,716 - ECD_02471 0.77 -1.7
2,581,781 - ECD_02471 0.84 +0.9
2,581,840 - +0.3
2,582,017 + -1.7
2,582,057 - -0.8
2,582,074 - +0.3
2,582,107 - ECD_02472 0.14 +0.2
2,582,107 - ECD_02472 0.14 +0.3
2,582,115 + ECD_02472 0.16 -0.3
2,582,115 + ECD_02472 0.16 +0.6
2,582,115 + ECD_02472 0.16 -0.4
2,582,115 + ECD_02472 0.16 +0.4
2,582,116 - ECD_02472 0.16 +1.3
2,582,139 + ECD_02472 0.20 +0.6
2,582,186 + ECD_02472 0.28 -0.2
2,582,266 + ECD_02472 0.41 -0.3
2,582,266 + ECD_02472 0.41 -0.8
2,582,266 + ECD_02472 0.41 +0.3
2,582,266 + ECD_02472 0.41 -0.1
2,582,267 - ECD_02472 0.41 -1.1
2,582,268 + ECD_02472 0.42 -0.5
2,582,268 + ECD_02472 0.42 -0.7
2,582,268 + ECD_02472 0.42 -0.4
2,582,269 - ECD_02472 0.42 -2.4
2,582,389 + ECD_02472 0.62 -0.0
2,582,390 - ECD_02472 0.62 -0.8
2,582,543 - ECD_02472 0.88 +0.3
2,582,595 - -1.2
2,582,649 - -1.3
2,582,661 - +0.3
2,582,661 - -0.4
2,582,668 - +1.2
2,582,789 - ECD_02473 0.32 -1.3
2,582,913 - ECD_02473 0.64 -2.1
2,583,044 - -1.8
2,583,128 - +0.5
2,583,129 + -0.8
2,583,129 + -2.2
2,583,130 - +0.7
2,583,130 - +0.7
2,583,130 - +0.7
2,583,130 - +0.2
2,583,130 - -0.7
2,583,130 - +0.9
2,583,131 + -2.4
2,583,132 - -0.1
2,583,132 - +0.4
2,583,132 - -0.0
2,583,132 - +1.2
2,583,132 - +0.1
2,583,318 + -2.2
2,583,323 + +1.5

Or see this region's nucleotide sequence