Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02419 and ECD_02420 are separated by 95 nucleotides ECD_02420 and ECD_02421 are separated by 16 nucleotides ECD_02421 and ECD_02422 are separated by 27 nucleotides ECD_02422 and ECD_02423 are separated by 111 nucleotides
ECD_02419: ECD_02419 - HscA co-chaperone, J domain-containing protein Hsc56; IscU-specific chaperone HscAB, at 2,524,757 to 2,525,272
_02419
ECD_02420: ECD_02420 - FeS cluster assembly protein, at 2,525,368 to 2,525,691
_02420
ECD_02421: ECD_02421 - iron-sulfur cluster assembly scaffold protein, at 2,525,708 to 2,526,094
_02421
ECD_02422: ECD_02422 - cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent, at 2,526,122 to 2,527,336
_02422
ECD_02423: ECD_02423 - isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor, at 2,527,448 to 2,527,936
_02423
Position (kb)
2526
2527
2528 Strain fitness (log2 ratio)
-1
0
1 at 2525.732 kb on - strand at 2525.732 kb on - strand at 2527.463 kb on - strand at 2527.508 kb on - strand, within ECD_02423 at 2527.565 kb on - strand, within ECD_02423 at 2527.565 kb on - strand, within ECD_02423 at 2527.565 kb on - strand, within ECD_02423 at 2527.565 kb on - strand, within ECD_02423 at 2527.565 kb on - strand, within ECD_02423 at 2527.701 kb on - strand, within ECD_02423 at 2527.764 kb on - strand, within ECD_02423 at 2527.816 kb on - strand, within ECD_02423 at 2527.912 kb on - strand at 2527.942 kb on - strand at 2527.942 kb on - strand at 2527.942 kb on - strand at 2528.002 kb on - strand at 2528.068 kb on - strand at 2528.068 kb on - strand at 2528.071 kb on + strand at 2528.156 kb on - strand at 2528.156 kb on - strand at 2528.162 kb on + strand at 2528.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,525,732 - +0.9 2,525,732 - +0.8 2,527,463 - +0.8 2,527,508 - ECD_02423 0.12 +0.1 2,527,565 - ECD_02423 0.24 +0.4 2,527,565 - ECD_02423 0.24 +0.9 2,527,565 - ECD_02423 0.24 +1.2 2,527,565 - ECD_02423 0.24 +0.9 2,527,565 - ECD_02423 0.24 +0.6 2,527,701 - ECD_02423 0.52 -0.4 2,527,764 - ECD_02423 0.65 +1.0 2,527,816 - ECD_02423 0.75 +1.7 2,527,912 - +0.3 2,527,942 - +0.2 2,527,942 - +0.7 2,527,942 - +1.4 2,528,002 - +1.0 2,528,068 - +0.5 2,528,068 - -0.2 2,528,071 + -0.1 2,528,156 - -0.8 2,528,156 - -0.0 2,528,162 + +0.5 2,528,163 - -0.3
Or see this region's nucleotide sequence