Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02316 and ECD_02317 are separated by 40 nucleotides ECD_02317 and ECD_02318 are separated by 42 nucleotides ECD_02318 and ECD_02319 are separated by 104 nucleotides ECD_02319 and ECD_02320 are separated by 32 nucleotides
ECD_02316: ECD_02316 - PEP-protein phosphotransferase of PTS system (enzyme I), at 2,406,453 to 2,408,180
_02316
ECD_02317: ECD_02317 - glucose-specific enzyme IIA component of PTS, at 2,408,221 to 2,408,730
_02317
ECD_02318: ECD_02318 - pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase, at 2,408,773 to 2,409,624
_02318
ECD_02319: ECD_02319 - uncharacterized protein, at 2,409,729 to 2,410,103
_02319
ECD_02320: ECD_02320 - WGR domain protein, at 2,410,136 to 2,410,870
_02320
Position (kb)
2408
2409
2410 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2408.134 kb on + strand at 2408.147 kb on + strand at 2408.280 kb on + strand, within ECD_02317 at 2409.148 kb on - strand, within ECD_02318 at 2409.339 kb on - strand, within ECD_02318 at 2409.592 kb on - strand at 2409.723 kb on - strand at 2409.764 kb on - strand at 2409.882 kb on - strand, within ECD_02319 at 2410.002 kb on + strand, within ECD_02319 at 2410.002 kb on + strand, within ECD_02319 at 2410.002 kb on + strand, within ECD_02319 at 2410.002 kb on + strand, within ECD_02319 at 2410.002 kb on + strand, within ECD_02319 at 2410.004 kb on + strand, within ECD_02319 at 2410.004 kb on + strand, within ECD_02319 at 2410.004 kb on + strand, within ECD_02319 at 2410.052 kb on - strand, within ECD_02319 at 2410.060 kb on + strand, within ECD_02319 at 2410.132 kb on + strand at 2410.204 kb on + strand at 2410.445 kb on + strand, within ECD_02320 at 2410.446 kb on - strand, within ECD_02320 at 2410.595 kb on + strand, within ECD_02320
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,408,134 + +2.6 2,408,147 + +2.3 2,408,280 + ECD_02317 0.12 +1.6 2,409,148 - ECD_02318 0.44 -2.2 2,409,339 - ECD_02318 0.66 -1.7 2,409,592 - -1.4 2,409,723 - -0.4 2,409,764 - +0.1 2,409,882 - ECD_02319 0.41 -1.1 2,410,002 + ECD_02319 0.73 -2.3 2,410,002 + ECD_02319 0.73 -1.4 2,410,002 + ECD_02319 0.73 -0.1 2,410,002 + ECD_02319 0.73 -1.0 2,410,002 + ECD_02319 0.73 -0.2 2,410,004 + ECD_02319 0.73 -1.0 2,410,004 + ECD_02319 0.73 -1.9 2,410,004 + ECD_02319 0.73 -1.1 2,410,052 - ECD_02319 0.86 -0.2 2,410,060 + ECD_02319 0.88 -0.0 2,410,132 + -0.0 2,410,204 + -0.6 2,410,445 + ECD_02320 0.42 -0.3 2,410,446 - ECD_02320 0.42 -0.9 2,410,595 + ECD_02320 0.62 -1.2
Or see this region's nucleotide sequence