Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02290 and ECD_02291 are separated by 14 nucleotides ECD_02291 and ECD_02292 are separated by 12 nucleotides ECD_02292 and ECD_02293 are separated by 2 nucleotides
ECD_02290: ECD_02290 - sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system, at 2,376,557 to 2,378,254
_02290
ECD_02291: ECD_02291 - response regulator activating yhjX; pyruvate-responsive YpdAB two-component system, at 2,378,269 to 2,379,003
_02291
ECD_02292: ECD_02292 - putative DNA-binding protein, at 2,379,016 to 2,379,873
_02292
ECD_02293: ECD_02293 - putative PTS enzyme: Hpr, enzyme I and IIA components, at 2,379,876 to 2,382,371
_02293
Position (kb)
2378
2379
2380 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2377.294 kb on + strand, within ECD_02290 at 2377.298 kb on - strand, within ECD_02290 at 2377.319 kb on + strand, within ECD_02290 at 2377.320 kb on - strand, within ECD_02290 at 2377.339 kb on + strand, within ECD_02290 at 2377.340 kb on - strand, within ECD_02290 at 2377.340 kb on - strand, within ECD_02290 at 2377.340 kb on - strand, within ECD_02290 at 2377.344 kb on - strand, within ECD_02290 at 2377.530 kb on + strand, within ECD_02290 at 2377.612 kb on - strand, within ECD_02290 at 2377.832 kb on + strand, within ECD_02290 at 2377.832 kb on + strand, within ECD_02290 at 2377.832 kb on + strand, within ECD_02290 at 2377.880 kb on + strand, within ECD_02290 at 2377.880 kb on + strand, within ECD_02290 at 2377.880 kb on + strand, within ECD_02290 at 2377.881 kb on - strand, within ECD_02290 at 2377.881 kb on - strand, within ECD_02290 at 2378.142 kb on + strand at 2378.202 kb on - strand at 2378.265 kb on + strand at 2378.433 kb on + strand, within ECD_02291 at 2378.434 kb on - strand, within ECD_02291 at 2378.731 kb on - strand, within ECD_02291 at 2378.734 kb on + strand, within ECD_02291 at 2378.734 kb on + strand, within ECD_02291 at 2378.734 kb on + strand, within ECD_02291 at 2378.789 kb on - strand, within ECD_02291 at 2378.917 kb on + strand, within ECD_02291 at 2378.917 kb on + strand, within ECD_02291 at 2379.147 kb on - strand, within ECD_02292 at 2379.147 kb on - strand, within ECD_02292 at 2379.246 kb on + strand, within ECD_02292 at 2379.299 kb on + strand, within ECD_02292 at 2379.340 kb on + strand, within ECD_02292 at 2379.489 kb on - strand, within ECD_02292 at 2379.489 kb on - strand, within ECD_02292 at 2379.489 kb on - strand, within ECD_02292 at 2379.701 kb on - strand, within ECD_02292 at 2379.748 kb on + strand, within ECD_02292 at 2379.912 kb on - strand at 2379.956 kb on + strand at 2379.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,377,294 + ECD_02290 0.43 +0.4 2,377,298 - ECD_02290 0.44 -0.5 2,377,319 + ECD_02290 0.45 -0.5 2,377,320 - ECD_02290 0.45 +1.2 2,377,339 + ECD_02290 0.46 -0.0 2,377,340 - ECD_02290 0.46 +0.8 2,377,340 - ECD_02290 0.46 +0.2 2,377,340 - ECD_02290 0.46 +0.5 2,377,344 - ECD_02290 0.46 -0.2 2,377,530 + ECD_02290 0.57 -1.9 2,377,612 - ECD_02290 0.62 -0.6 2,377,832 + ECD_02290 0.75 +1.6 2,377,832 + ECD_02290 0.75 +0.3 2,377,832 + ECD_02290 0.75 +1.2 2,377,880 + ECD_02290 0.78 +0.7 2,377,880 + ECD_02290 0.78 +1.2 2,377,880 + ECD_02290 0.78 +0.2 2,377,881 - ECD_02290 0.78 -1.4 2,377,881 - ECD_02290 0.78 +0.3 2,378,142 + +1.8 2,378,202 - -0.4 2,378,265 + -0.4 2,378,433 + ECD_02291 0.22 -1.6 2,378,434 - ECD_02291 0.22 -2.7 2,378,731 - ECD_02291 0.63 -2.5 2,378,734 + ECD_02291 0.63 -0.9 2,378,734 + ECD_02291 0.63 -0.5 2,378,734 + ECD_02291 0.63 +0.7 2,378,789 - ECD_02291 0.71 -0.3 2,378,917 + ECD_02291 0.88 -0.5 2,378,917 + ECD_02291 0.88 -0.0 2,379,147 - ECD_02292 0.15 -0.1 2,379,147 - ECD_02292 0.15 -0.7 2,379,246 + ECD_02292 0.27 -0.7 2,379,299 + ECD_02292 0.33 -0.5 2,379,340 + ECD_02292 0.38 +0.0 2,379,489 - ECD_02292 0.55 +0.4 2,379,489 - ECD_02292 0.55 -0.2 2,379,489 - ECD_02292 0.55 +0.5 2,379,701 - ECD_02292 0.80 -2.2 2,379,748 + ECD_02292 0.85 -1.6 2,379,912 - -1.3 2,379,956 + -1.8 2,379,957 - -0.0
Or see this region's nucleotide sequence