Strain Fitness in Escherichia coli BL21 around ECD_02174

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02173 and ECD_02174 are separated by 14 nucleotidesECD_02174 and ECD_02175 are separated by 219 nucleotides ECD_02173: ECD_02173 - L-rhamnonate dehydratase, at 2,250,383 to 2,251,588 _02173 ECD_02174: ECD_02174 - putative DNA-binding transcriptional regulator for the rhm operon, at 2,251,603 to 2,252,385 _02174 ECD_02175: ECD_02175 - inactive PncC family protein, at 2,252,605 to 2,253,807 _02175 Position (kb) 2251 2252 2253Strain fitness (log2 ratio) -2 -1 0 1 2at 2250.823 kb on - strand, within ECD_02173at 2250.864 kb on + strand, within ECD_02173at 2250.898 kb on - strand, within ECD_02173at 2251.225 kb on - strand, within ECD_02173at 2251.227 kb on + strand, within ECD_02173at 2251.688 kb on + strand, within ECD_02174at 2251.800 kb on - strand, within ECD_02174at 2251.818 kb on - strand, within ECD_02174at 2251.818 kb on - strand, within ECD_02174at 2252.087 kb on - strand, within ECD_02174at 2252.259 kb on - strand, within ECD_02174at 2252.401 kb on + strandat 2252.402 kb on - strandat 2252.615 kb on - strandat 2253.205 kb on + strand, within ECD_02175at 2253.206 kb on - strand, within ECD_02175at 2253.381 kb on + strand, within ECD_02175

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,250,823 - ECD_02173 0.36 -0.9
2,250,864 + ECD_02173 0.40 +0.6
2,250,898 - ECD_02173 0.43 -0.1
2,251,225 - ECD_02173 0.70 -0.8
2,251,227 + ECD_02173 0.70 -1.0
2,251,688 + ECD_02174 0.11 -0.4
2,251,800 - ECD_02174 0.25 +1.9
2,251,818 - ECD_02174 0.27 -0.1
2,251,818 - ECD_02174 0.27 -0.2
2,252,087 - ECD_02174 0.62 -2.4
2,252,259 - ECD_02174 0.84 -1.3
2,252,401 + +0.9
2,252,402 - -0.0
2,252,615 - -0.9
2,253,205 + ECD_02175 0.50 -0.1
2,253,206 - ECD_02175 0.50 -0.4
2,253,381 + ECD_02175 0.65 +0.1

Or see this region's nucleotide sequence