Strain Fitness in Escherichia coli BL21 around ECD_02098

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02096 and ECD_02097 are separated by 16 nucleotidesECD_02097 and ECD_02098 overlap by 1 nucleotidesECD_02098 and ECD_02099 are separated by 367 nucleotides ECD_02096: ECD_02096 - fused fructose-specific PTS enzymes: IIBcomponent/IIC components, at 2,154,568 to 2,156,259 _02096 ECD_02097: ECD_02097 - fructose-1-phosphate kinase, at 2,156,276 to 2,157,214 _02097 ECD_02098: ECD_02098 - fused fructose-specific PTS enzymes: IIA component/HPr component, at 2,157,214 to 2,158,344 _02098 ECD_02099: ECD_02099 - lactose/glucose efflux system, at 2,158,712 to 2,159,893 _02099 Position (kb) 2157 2158 2159Strain fitness (log2 ratio) -1 0 1 2at 2156.292 kb on - strandat 2156.292 kb on - strandat 2156.336 kb on - strandat 2156.339 kb on - strandat 2156.358 kb on - strandat 2156.447 kb on - strand, within ECD_02097at 2156.472 kb on - strand, within ECD_02097at 2156.552 kb on - strand, within ECD_02097at 2156.552 kb on - strand, within ECD_02097at 2156.958 kb on - strand, within ECD_02097at 2157.069 kb on - strand, within ECD_02097at 2157.194 kb on - strandat 2157.197 kb on - strandat 2157.319 kb on - strandat 2157.349 kb on - strand, within ECD_02098at 2157.349 kb on - strand, within ECD_02098at 2157.405 kb on + strand, within ECD_02098at 2157.571 kb on - strand, within ECD_02098at 2157.745 kb on - strand, within ECD_02098at 2158.065 kb on - strand, within ECD_02098at 2158.168 kb on - strand, within ECD_02098at 2158.345 kb on - strandat 2158.345 kb on - strandat 2158.345 kb on - strandat 2158.456 kb on + strandat 2158.456 kb on + strandat 2158.457 kb on - strandat 2158.675 kb on + strandat 2158.675 kb on + strandat 2158.717 kb on + strandat 2158.848 kb on + strand, within ECD_02099at 2159.038 kb on - strand, within ECD_02099at 2159.237 kb on + strand, within ECD_02099

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
remove
2,156,292 - -0.3
2,156,292 - +0.8
2,156,336 - +0.4
2,156,339 - +1.0
2,156,358 - +1.6
2,156,447 - ECD_02097 0.18 +1.6
2,156,472 - ECD_02097 0.21 +1.6
2,156,552 - ECD_02097 0.29 +1.3
2,156,552 - ECD_02097 0.29 +1.5
2,156,958 - ECD_02097 0.73 +2.2
2,157,069 - ECD_02097 0.84 +2.3
2,157,194 - +2.1
2,157,197 - +1.4
2,157,319 - +2.1
2,157,349 - ECD_02098 0.12 +1.5
2,157,349 - ECD_02098 0.12 +2.3
2,157,405 + ECD_02098 0.17 +0.3
2,157,571 - ECD_02098 0.32 +1.7
2,157,745 - ECD_02098 0.47 +1.5
2,158,065 - ECD_02098 0.75 +2.0
2,158,168 - ECD_02098 0.84 +0.8
2,158,345 - +0.6
2,158,345 - +0.4
2,158,345 - +0.6
2,158,456 + -0.1
2,158,456 + -1.4
2,158,457 - -0.4
2,158,675 + -1.6
2,158,675 + +1.8
2,158,717 + -0.1
2,158,848 + ECD_02099 0.12 +2.5
2,159,038 - ECD_02099 0.28 -0.2
2,159,237 + ECD_02099 0.44 -1.2

Or see this region's nucleotide sequence