Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02096 and ECD_02097 are separated by 16 nucleotides ECD_02097 and ECD_02098 overlap by 1 nucleotides ECD_02098 and ECD_02099 are separated by 367 nucleotides
ECD_02096: ECD_02096 - fused fructose-specific PTS enzymes: IIBcomponent/IIC components, at 2,154,568 to 2,156,259
_02096
ECD_02097: ECD_02097 - fructose-1-phosphate kinase, at 2,156,276 to 2,157,214
_02097
ECD_02098: ECD_02098 - fused fructose-specific PTS enzymes: IIA component/HPr component, at 2,157,214 to 2,158,344
_02098
ECD_02099: ECD_02099 - lactose/glucose efflux system, at 2,158,712 to 2,159,893
_02099
Position (kb)
2157
2158
2159 Strain fitness (log2 ratio)
-1
0
1
2 at 2156.292 kb on - strand at 2156.292 kb on - strand at 2156.336 kb on - strand at 2156.339 kb on - strand at 2156.358 kb on - strand at 2156.447 kb on - strand, within ECD_02097 at 2156.472 kb on - strand, within ECD_02097 at 2156.552 kb on - strand, within ECD_02097 at 2156.552 kb on - strand, within ECD_02097 at 2156.958 kb on - strand, within ECD_02097 at 2157.069 kb on - strand, within ECD_02097 at 2157.194 kb on - strand at 2157.197 kb on - strand at 2157.319 kb on - strand at 2157.349 kb on - strand, within ECD_02098 at 2157.349 kb on - strand, within ECD_02098 at 2157.405 kb on + strand, within ECD_02098 at 2157.571 kb on - strand, within ECD_02098 at 2157.745 kb on - strand, within ECD_02098 at 2158.065 kb on - strand, within ECD_02098 at 2158.168 kb on - strand, within ECD_02098 at 2158.345 kb on - strand at 2158.345 kb on - strand at 2158.345 kb on - strand at 2158.456 kb on + strand at 2158.456 kb on + strand at 2158.457 kb on - strand at 2158.675 kb on + strand at 2158.675 kb on + strand at 2158.717 kb on + strand at 2158.848 kb on + strand, within ECD_02099 at 2159.038 kb on - strand, within ECD_02099 at 2159.237 kb on + strand, within ECD_02099
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,156,292 - -0.3 2,156,292 - +0.8 2,156,336 - +0.4 2,156,339 - +1.0 2,156,358 - +1.6 2,156,447 - ECD_02097 0.18 +1.6 2,156,472 - ECD_02097 0.21 +1.6 2,156,552 - ECD_02097 0.29 +1.3 2,156,552 - ECD_02097 0.29 +1.5 2,156,958 - ECD_02097 0.73 +2.2 2,157,069 - ECD_02097 0.84 +2.3 2,157,194 - +2.1 2,157,197 - +1.4 2,157,319 - +2.1 2,157,349 - ECD_02098 0.12 +1.5 2,157,349 - ECD_02098 0.12 +2.3 2,157,405 + ECD_02098 0.17 +0.3 2,157,571 - ECD_02098 0.32 +1.7 2,157,745 - ECD_02098 0.47 +1.5 2,158,065 - ECD_02098 0.75 +2.0 2,158,168 - ECD_02098 0.84 +0.8 2,158,345 - +0.6 2,158,345 - +0.4 2,158,345 - +0.6 2,158,456 + -0.1 2,158,456 + -1.4 2,158,457 - -0.4 2,158,675 + -1.6 2,158,675 + +1.8 2,158,717 + -0.1 2,158,848 + ECD_02099 0.12 +2.5 2,159,038 - ECD_02099 0.28 -0.2 2,159,237 + ECD_02099 0.44 -1.2
Or see this region's nucleotide sequence