Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02063 and ECD_02064 are separated by 37 nucleotides ECD_02064 and ECD_02065 are separated by 173 nucleotides ECD_02065 and ECD_02066 are separated by 169 nucleotides
ECD_02063: ECD_02063 - D-lactate dehydrogenase, FAD-binding, NADH independent, at 2,117,089 to 2,118,804
_02063
ECD_02064: ECD_02064 - D-alanyl-D-alanine endopeptidase, at 2,118,842 to 2,119,774
_02064
ECD_02065: ECD_02065 - Yip1 family inner membrane protein, at 2,119,948 to 2,120,535
_02065
ECD_02066: ECD_02066 - DedA family inner membrane protein, at 2,120,705 to 2,121,283
_02066
Position (kb)
2118
2119
2120 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2117.882 kb on + strand, within ECD_02063 at 2118.015 kb on + strand, within ECD_02063 at 2118.496 kb on + strand, within ECD_02063 at 2118.506 kb on + strand, within ECD_02063 at 2118.544 kb on + strand, within ECD_02063 at 2118.565 kb on + strand, within ECD_02063 at 2118.565 kb on + strand, within ECD_02063 at 2118.565 kb on + strand, within ECD_02063 at 2118.641 kb on + strand at 2118.692 kb on - strand at 2118.809 kb on + strand at 2118.844 kb on - strand at 2118.898 kb on + strand at 2118.984 kb on + strand, within ECD_02064 at 2118.985 kb on - strand, within ECD_02064 at 2119.072 kb on + strand, within ECD_02064 at 2119.126 kb on + strand, within ECD_02064 at 2119.126 kb on + strand, within ECD_02064 at 2119.127 kb on - strand, within ECD_02064 at 2119.130 kb on - strand, within ECD_02064 at 2119.833 kb on + strand at 2119.834 kb on - strand at 2119.950 kb on - strand at 2119.978 kb on + strand at 2119.978 kb on + strand at 2119.978 kb on + strand at 2120.037 kb on + strand, within ECD_02065 at 2120.038 kb on - strand, within ECD_02065 at 2120.046 kb on + strand, within ECD_02065 at 2120.047 kb on - strand, within ECD_02065 at 2120.094 kb on - strand, within ECD_02065 at 2120.111 kb on + strand, within ECD_02065 at 2120.160 kb on - strand, within ECD_02065 at 2120.578 kb on - strand at 2120.578 kb on - strand at 2120.579 kb on + strand at 2120.580 kb on - strand at 2120.704 kb on + strand at 2120.716 kb on + strand at 2120.717 kb on - strand at 2120.722 kb on + strand at 2120.722 kb on + strand at 2120.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,117,882 + ECD_02063 0.46 +0.3 2,118,015 + ECD_02063 0.54 -1.8 2,118,496 + ECD_02063 0.82 +2.6 2,118,506 + ECD_02063 0.83 +0.2 2,118,544 + ECD_02063 0.85 -0.7 2,118,565 + ECD_02063 0.86 +2.0 2,118,565 + ECD_02063 0.86 -0.6 2,118,565 + ECD_02063 0.86 -0.2 2,118,641 + +0.4 2,118,692 - -1.9 2,118,809 + -0.4 2,118,844 - +0.7 2,118,898 + -1.0 2,118,984 + ECD_02064 0.15 -0.1 2,118,985 - ECD_02064 0.15 +0.3 2,119,072 + ECD_02064 0.25 -0.1 2,119,126 + ECD_02064 0.30 -1.1 2,119,126 + ECD_02064 0.30 +0.7 2,119,127 - ECD_02064 0.31 +0.5 2,119,130 - ECD_02064 0.31 -2.1 2,119,833 + +0.8 2,119,834 - -1.6 2,119,950 - +0.9 2,119,978 + -0.1 2,119,978 + -1.4 2,119,978 + -0.5 2,120,037 + ECD_02065 0.15 +1.2 2,120,038 - ECD_02065 0.15 +0.2 2,120,046 + ECD_02065 0.17 +1.2 2,120,047 - ECD_02065 0.17 -1.1 2,120,094 - ECD_02065 0.25 +0.2 2,120,111 + ECD_02065 0.28 -1.2 2,120,160 - ECD_02065 0.36 +2.5 2,120,578 - -0.8 2,120,578 - -0.1 2,120,579 + -1.6 2,120,580 - -0.5 2,120,704 + -0.6 2,120,716 + +0.1 2,120,717 - -0.4 2,120,722 + -0.4 2,120,722 + +1.4 2,120,723 - -0.0
Or see this region's nucleotide sequence