Strain Fitness in Escherichia coli BL21 around ECD_02064

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02063 and ECD_02064 are separated by 37 nucleotidesECD_02064 and ECD_02065 are separated by 173 nucleotidesECD_02065 and ECD_02066 are separated by 169 nucleotides ECD_02063: ECD_02063 - D-lactate dehydrogenase, FAD-binding, NADH independent, at 2,117,089 to 2,118,804 _02063 ECD_02064: ECD_02064 - D-alanyl-D-alanine endopeptidase, at 2,118,842 to 2,119,774 _02064 ECD_02065: ECD_02065 - Yip1 family inner membrane protein, at 2,119,948 to 2,120,535 _02065 ECD_02066: ECD_02066 - DedA family inner membrane protein, at 2,120,705 to 2,121,283 _02066 Position (kb) 2118 2119 2120Strain fitness (log2 ratio) -2 -1 0 1 2at 2117.882 kb on + strand, within ECD_02063at 2118.015 kb on + strand, within ECD_02063at 2118.496 kb on + strand, within ECD_02063at 2118.506 kb on + strand, within ECD_02063at 2118.544 kb on + strand, within ECD_02063at 2118.565 kb on + strand, within ECD_02063at 2118.565 kb on + strand, within ECD_02063at 2118.565 kb on + strand, within ECD_02063at 2118.641 kb on + strandat 2118.692 kb on - strandat 2118.809 kb on + strandat 2118.844 kb on - strandat 2118.898 kb on + strandat 2118.984 kb on + strand, within ECD_02064at 2118.985 kb on - strand, within ECD_02064at 2119.072 kb on + strand, within ECD_02064at 2119.126 kb on + strand, within ECD_02064at 2119.126 kb on + strand, within ECD_02064at 2119.127 kb on - strand, within ECD_02064at 2119.130 kb on - strand, within ECD_02064at 2119.833 kb on + strandat 2119.834 kb on - strandat 2119.950 kb on - strandat 2119.978 kb on + strandat 2119.978 kb on + strandat 2119.978 kb on + strandat 2120.037 kb on + strand, within ECD_02065at 2120.038 kb on - strand, within ECD_02065at 2120.046 kb on + strand, within ECD_02065at 2120.047 kb on - strand, within ECD_02065at 2120.094 kb on - strand, within ECD_02065at 2120.111 kb on + strand, within ECD_02065at 2120.160 kb on - strand, within ECD_02065at 2120.578 kb on - strandat 2120.578 kb on - strandat 2120.579 kb on + strandat 2120.580 kb on - strandat 2120.704 kb on + strandat 2120.716 kb on + strandat 2120.717 kb on - strandat 2120.722 kb on + strandat 2120.722 kb on + strandat 2120.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,117,882 + ECD_02063 0.46 +0.3
2,118,015 + ECD_02063 0.54 -1.8
2,118,496 + ECD_02063 0.82 +2.6
2,118,506 + ECD_02063 0.83 +0.2
2,118,544 + ECD_02063 0.85 -0.7
2,118,565 + ECD_02063 0.86 +2.0
2,118,565 + ECD_02063 0.86 -0.6
2,118,565 + ECD_02063 0.86 -0.2
2,118,641 + +0.4
2,118,692 - -1.9
2,118,809 + -0.4
2,118,844 - +0.7
2,118,898 + -1.0
2,118,984 + ECD_02064 0.15 -0.1
2,118,985 - ECD_02064 0.15 +0.3
2,119,072 + ECD_02064 0.25 -0.1
2,119,126 + ECD_02064 0.30 -1.1
2,119,126 + ECD_02064 0.30 +0.7
2,119,127 - ECD_02064 0.31 +0.5
2,119,130 - ECD_02064 0.31 -2.1
2,119,833 + +0.8
2,119,834 - -1.6
2,119,950 - +0.9
2,119,978 + -0.1
2,119,978 + -1.4
2,119,978 + -0.5
2,120,037 + ECD_02065 0.15 +1.2
2,120,038 - ECD_02065 0.15 +0.2
2,120,046 + ECD_02065 0.17 +1.2
2,120,047 - ECD_02065 0.17 -1.1
2,120,094 - ECD_02065 0.25 +0.2
2,120,111 + ECD_02065 0.28 -1.2
2,120,160 - ECD_02065 0.36 +2.5
2,120,578 - -0.8
2,120,578 - -0.1
2,120,579 + -1.6
2,120,580 - -0.5
2,120,704 + -0.6
2,120,716 + +0.1
2,120,717 - -0.4
2,120,722 + -0.4
2,120,722 + +1.4
2,120,723 - -0.0

Or see this region's nucleotide sequence