Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02056 and ECD_02057 are separated by 59 nucleotides ECD_02057 and ECD_02058 overlap by 20 nucleotides ECD_02058 and ECD_02059 are separated by 4 nucleotides ECD_02059 and ECD_02060 overlap by 8 nucleotides
ECD_02056: ECD_02056 - transcriptional activator of csgD and csgBA, at 2,109,729 to 2,110,460
_02056
ECD_02057: ECD_02057 - putative membrane protein, at 2,110,520 to 2,110,627
_02057
ECD_02058: ECD_02058 - putative ABC transporter permease, at 2,110,608 to 2,111,339
_02058
ECD_02059: ECD_02059 - putative ABC transporter ATPase, at 2,111,344 to 2,112,270
_02059
ECD_02060: ECD_02060 - putative ABC transporter permease, at 2,112,263 to 2,113,420
_02060
Position (kb)
2111
2112
2113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2110.359 kb on - strand, within ECD_02056 at 2110.359 kb on - strand, within ECD_02056 at 2110.519 kb on + strand at 2110.527 kb on + strand at 2110.528 kb on - strand at 2110.603 kb on + strand, within ECD_02057 at 2110.609 kb on + strand at 2110.706 kb on - strand, within ECD_02058 at 2110.849 kb on - strand, within ECD_02058 at 2111.073 kb on - strand, within ECD_02058 at 2111.514 kb on - strand, within ECD_02059 at 2111.527 kb on - strand, within ECD_02059 at 2111.560 kb on - strand, within ECD_02059 at 2111.632 kb on + strand, within ECD_02059 at 2111.654 kb on - strand, within ECD_02059 at 2111.932 kb on - strand, within ECD_02059 at 2112.445 kb on + strand, within ECD_02060 at 2112.446 kb on - strand, within ECD_02060 at 2112.488 kb on + strand, within ECD_02060 at 2112.596 kb on + strand, within ECD_02060 at 2112.628 kb on - strand, within ECD_02060 at 2112.672 kb on - strand, within ECD_02060 at 2113.173 kb on - strand, within ECD_02060
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,110,359 - ECD_02056 0.86 -0.1 2,110,359 - ECD_02056 0.86 -1.0 2,110,519 + +0.1 2,110,527 + -0.2 2,110,528 - -0.4 2,110,603 + ECD_02057 0.77 +0.2 2,110,609 + +0.7 2,110,706 - ECD_02058 0.13 +0.2 2,110,849 - ECD_02058 0.33 +1.5 2,111,073 - ECD_02058 0.64 -0.7 2,111,514 - ECD_02059 0.18 -1.8 2,111,527 - ECD_02059 0.20 +0.2 2,111,560 - ECD_02059 0.23 -1.3 2,111,632 + ECD_02059 0.31 -0.7 2,111,654 - ECD_02059 0.33 -0.7 2,111,932 - ECD_02059 0.63 +0.6 2,112,445 + ECD_02060 0.16 +2.2 2,112,446 - ECD_02060 0.16 -0.1 2,112,488 + ECD_02060 0.19 -1.3 2,112,596 + ECD_02060 0.29 +0.7 2,112,628 - ECD_02060 0.32 -0.3 2,112,672 - ECD_02060 0.35 -0.8 2,113,173 - ECD_02060 0.79 +0.3
Or see this region's nucleotide sequence