Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02048 and ECD_02049 are separated by 10 nucleotides ECD_02049 and ECD_02050 overlap by 8 nucleotides
ECD_02048: ECD_02048 - putative hexameric AAA+ MoxR family ATPase, at 2,099,458 to 2,100,546
_02048
ECD_02049: ECD_02049 - uncharacterized protein, at 2,100,557 to 2,102,836
_02049
ECD_02050: ECD_02050 - VMA domain putative YehL ATPase stimulator, at 2,102,829 to 2,103,965
_02050
Position (kb)
2100
2101
2102
2103 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2099.661 kb on + strand, within ECD_02048 at 2099.818 kb on + strand, within ECD_02048 at 2099.818 kb on + strand, within ECD_02048 at 2099.966 kb on + strand, within ECD_02048 at 2099.971 kb on - strand, within ECD_02048 at 2100.217 kb on - strand, within ECD_02048 at 2100.518 kb on - strand at 2100.724 kb on + strand at 2100.743 kb on + strand at 2101.126 kb on + strand, within ECD_02049 at 2101.140 kb on + strand, within ECD_02049 at 2101.140 kb on + strand, within ECD_02049 at 2101.254 kb on - strand, within ECD_02049 at 2101.483 kb on + strand, within ECD_02049 at 2101.484 kb on - strand, within ECD_02049 at 2101.484 kb on - strand, within ECD_02049 at 2101.488 kb on + strand, within ECD_02049 at 2101.735 kb on + strand, within ECD_02049 at 2101.736 kb on - strand, within ECD_02049 at 2101.783 kb on - strand, within ECD_02049 at 2101.819 kb on - strand, within ECD_02049 at 2102.011 kb on + strand, within ECD_02049 at 2102.055 kb on + strand, within ECD_02049 at 2102.127 kb on + strand, within ECD_02049 at 2102.178 kb on + strand, within ECD_02049 at 2102.310 kb on + strand, within ECD_02049 at 2102.310 kb on + strand, within ECD_02049 at 2102.427 kb on + strand, within ECD_02049 at 2102.428 kb on - strand, within ECD_02049 at 2102.589 kb on + strand, within ECD_02049 at 2102.634 kb on + strand at 2103.159 kb on - strand, within ECD_02050 at 2103.339 kb on - strand, within ECD_02050
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,099,661 + ECD_02048 0.19 -0.9 2,099,818 + ECD_02048 0.33 +1.3 2,099,818 + ECD_02048 0.33 -1.5 2,099,966 + ECD_02048 0.47 +0.3 2,099,971 - ECD_02048 0.47 -0.8 2,100,217 - ECD_02048 0.70 -0.7 2,100,518 - +0.2 2,100,724 + -1.5 2,100,743 + +1.3 2,101,126 + ECD_02049 0.25 +1.2 2,101,140 + ECD_02049 0.26 -0.2 2,101,140 + ECD_02049 0.26 -1.0 2,101,254 - ECD_02049 0.31 -0.5 2,101,483 + ECD_02049 0.41 +2.2 2,101,484 - ECD_02049 0.41 +2.1 2,101,484 - ECD_02049 0.41 -1.4 2,101,488 + ECD_02049 0.41 +0.0 2,101,735 + ECD_02049 0.52 -1.5 2,101,736 - ECD_02049 0.52 -0.1 2,101,783 - ECD_02049 0.54 +1.9 2,101,819 - ECD_02049 0.55 -0.3 2,102,011 + ECD_02049 0.64 +0.0 2,102,055 + ECD_02049 0.66 -0.8 2,102,127 + ECD_02049 0.69 +0.2 2,102,178 + ECD_02049 0.71 -2.3 2,102,310 + ECD_02049 0.77 +0.4 2,102,310 + ECD_02049 0.77 -0.9 2,102,427 + ECD_02049 0.82 -1.2 2,102,428 - ECD_02049 0.82 +0.8 2,102,589 + ECD_02049 0.89 +0.0 2,102,634 + +2.2 2,103,159 - ECD_02050 0.29 +1.6 2,103,339 - ECD_02050 0.45 +1.0
Or see this region's nucleotide sequence