Strain Fitness in Escherichia coli BL21 around ECD_02049

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02048 and ECD_02049 are separated by 10 nucleotidesECD_02049 and ECD_02050 overlap by 8 nucleotides ECD_02048: ECD_02048 - putative hexameric AAA+ MoxR family ATPase, at 2,099,458 to 2,100,546 _02048 ECD_02049: ECD_02049 - uncharacterized protein, at 2,100,557 to 2,102,836 _02049 ECD_02050: ECD_02050 - VMA domain putative YehL ATPase stimulator, at 2,102,829 to 2,103,965 _02050 Position (kb) 2100 2101 2102 2103Strain fitness (log2 ratio) -2 -1 0 1 2at 2099.661 kb on + strand, within ECD_02048at 2099.818 kb on + strand, within ECD_02048at 2099.818 kb on + strand, within ECD_02048at 2099.966 kb on + strand, within ECD_02048at 2099.971 kb on - strand, within ECD_02048at 2100.217 kb on - strand, within ECD_02048at 2100.518 kb on - strandat 2100.724 kb on + strandat 2100.743 kb on + strandat 2101.126 kb on + strand, within ECD_02049at 2101.140 kb on + strand, within ECD_02049at 2101.140 kb on + strand, within ECD_02049at 2101.254 kb on - strand, within ECD_02049at 2101.483 kb on + strand, within ECD_02049at 2101.484 kb on - strand, within ECD_02049at 2101.484 kb on - strand, within ECD_02049at 2101.488 kb on + strand, within ECD_02049at 2101.735 kb on + strand, within ECD_02049at 2101.736 kb on - strand, within ECD_02049at 2101.783 kb on - strand, within ECD_02049at 2101.819 kb on - strand, within ECD_02049at 2102.011 kb on + strand, within ECD_02049at 2102.055 kb on + strand, within ECD_02049at 2102.127 kb on + strand, within ECD_02049at 2102.178 kb on + strand, within ECD_02049at 2102.310 kb on + strand, within ECD_02049at 2102.310 kb on + strand, within ECD_02049at 2102.427 kb on + strand, within ECD_02049at 2102.428 kb on - strand, within ECD_02049at 2102.589 kb on + strand, within ECD_02049at 2102.634 kb on + strandat 2103.159 kb on - strand, within ECD_02050at 2103.339 kb on - strand, within ECD_02050

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,099,661 + ECD_02048 0.19 -0.9
2,099,818 + ECD_02048 0.33 +1.3
2,099,818 + ECD_02048 0.33 -1.5
2,099,966 + ECD_02048 0.47 +0.3
2,099,971 - ECD_02048 0.47 -0.8
2,100,217 - ECD_02048 0.70 -0.7
2,100,518 - +0.2
2,100,724 + -1.5
2,100,743 + +1.3
2,101,126 + ECD_02049 0.25 +1.2
2,101,140 + ECD_02049 0.26 -0.2
2,101,140 + ECD_02049 0.26 -1.0
2,101,254 - ECD_02049 0.31 -0.5
2,101,483 + ECD_02049 0.41 +2.2
2,101,484 - ECD_02049 0.41 +2.1
2,101,484 - ECD_02049 0.41 -1.4
2,101,488 + ECD_02049 0.41 +0.0
2,101,735 + ECD_02049 0.52 -1.5
2,101,736 - ECD_02049 0.52 -0.1
2,101,783 - ECD_02049 0.54 +1.9
2,101,819 - ECD_02049 0.55 -0.3
2,102,011 + ECD_02049 0.64 +0.0
2,102,055 + ECD_02049 0.66 -0.8
2,102,127 + ECD_02049 0.69 +0.2
2,102,178 + ECD_02049 0.71 -2.3
2,102,310 + ECD_02049 0.77 +0.4
2,102,310 + ECD_02049 0.77 -0.9
2,102,427 + ECD_02049 0.82 -1.2
2,102,428 - ECD_02049 0.82 +0.8
2,102,589 + ECD_02049 0.89 +0.0
2,102,634 + +2.2
2,103,159 - ECD_02050 0.29 +1.6
2,103,339 - ECD_02050 0.45 +1.0

Or see this region's nucleotide sequence