Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02040 and ECD_02041 overlap by 82 nucleotides ECD_02041 and ECD_02042 are separated by 28 nucleotides ECD_02042 and ECD_02043 are separated by 262 nucleotides ECD_02043 and ECD_02044 are separated by 131 nucleotides
ECD_02040: ECD_02040 - IS1 protein InsB, at 2,086,745 to 2,087,248
_02040
ECD_02041: ECD_02041 - IS1 protein InsA, at 2,087,167 to 2,087,442
_02041
ECD_02042: ECD_02042 - DUF2574 family protein, at 2,087,471 to 2,087,659
_02042
ECD_02043: ECD_02043 - antiporter inner membrane protein, at 2,087,922 to 2,089,031
_02043
ECD_02044: ECD_02044 - methionyl-tRNA synthetase, at 2,089,163 to 2,091,196
_02044
Position (kb)
2087
2088
2089
2090 Strain fitness (log2 ratio)
-1
0
1
2 at 2087.533 kb on + strand, within ECD_02042 at 2087.539 kb on + strand, within ECD_02042 at 2087.649 kb on + strand at 2087.675 kb on + strand at 2087.716 kb on + strand at 2087.716 kb on + strand at 2087.716 kb on + strand at 2087.724 kb on + strand at 2087.724 kb on + strand at 2088.008 kb on - strand at 2088.075 kb on + strand, within ECD_02043 at 2088.075 kb on + strand, within ECD_02043 at 2088.075 kb on + strand, within ECD_02043 at 2088.076 kb on - strand, within ECD_02043 at 2088.113 kb on + strand, within ECD_02043 at 2088.113 kb on + strand, within ECD_02043 at 2088.114 kb on - strand, within ECD_02043 at 2088.179 kb on + strand, within ECD_02043 at 2088.188 kb on + strand, within ECD_02043 at 2088.188 kb on + strand, within ECD_02043 at 2088.188 kb on + strand, within ECD_02043 at 2088.512 kb on + strand, within ECD_02043 at 2088.513 kb on - strand, within ECD_02043 at 2088.524 kb on + strand, within ECD_02043 at 2088.592 kb on + strand, within ECD_02043 at 2088.593 kb on - strand, within ECD_02043 at 2088.671 kb on + strand, within ECD_02043 at 2088.723 kb on - strand, within ECD_02043 at 2089.049 kb on - strand at 2089.049 kb on - strand at 2089.051 kb on - strand at 2089.054 kb on + strand at 2089.070 kb on - strand at 2089.075 kb on - strand at 2089.128 kb on + strand at 2089.128 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 2,087,533 + ECD_02042 0.33 -0.9 2,087,539 + ECD_02042 0.36 -1.1 2,087,649 + +1.2 2,087,675 + -0.2 2,087,716 + +0.1 2,087,716 + -0.9 2,087,716 + +0.9 2,087,724 + -0.1 2,087,724 + -0.7 2,088,008 - +0.6 2,088,075 + ECD_02043 0.14 -0.1 2,088,075 + ECD_02043 0.14 -1.2 2,088,075 + ECD_02043 0.14 +1.4 2,088,076 - ECD_02043 0.14 +0.3 2,088,113 + ECD_02043 0.17 +0.0 2,088,113 + ECD_02043 0.17 +0.3 2,088,114 - ECD_02043 0.17 +0.6 2,088,179 + ECD_02043 0.23 -0.2 2,088,188 + ECD_02043 0.24 +0.9 2,088,188 + ECD_02043 0.24 +0.6 2,088,188 + ECD_02043 0.24 +0.6 2,088,512 + ECD_02043 0.53 -0.1 2,088,513 - ECD_02043 0.53 +1.0 2,088,524 + ECD_02043 0.54 +1.9 2,088,592 + ECD_02043 0.60 +0.3 2,088,593 - ECD_02043 0.60 +0.9 2,088,671 + ECD_02043 0.67 -0.9 2,088,723 - ECD_02043 0.72 +1.4 2,089,049 - +1.1 2,089,049 - +0.6 2,089,051 - +0.6 2,089,054 + +0.0 2,089,070 - +0.3 2,089,075 - -0.2 2,089,128 + +1.5 2,089,128 + +1.2
Or see this region's nucleotide sequence