Strain Fitness in Escherichia coli BL21 around ECD_02017

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04288 and ECD_04281 overlap by 82 nucleotidesECD_04281 and ECD_02017 are separated by 353 nucleotidesECD_02017 and ECD_02018 are separated by 47 nucleotides ECD_04288: ECD_04288 - IS1 protein InsA, at 2,068,587 to 2,068,862 _04288 ECD_04281: ECD_04281 - IS1 protein InsB, at 2,068,781 to 2,069,284 _04281 ECD_02017: ECD_02017 - galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding, at 2,069,638 to 2,070,678 _02017 ECD_02018: ECD_02018 - galactitol-specific enzyme IIC component of PTS, at 2,070,726 to 2,072,081 _02018 Position (kb) 2069 2070 2071Strain fitness (log2 ratio) -2 -1 0 1 2at 2069.752 kb on - strand, within ECD_02017at 2069.752 kb on - strand, within ECD_02017at 2069.811 kb on - strand, within ECD_02017at 2069.852 kb on - strand, within ECD_02017at 2070.049 kb on - strand, within ECD_02017at 2070.184 kb on - strand, within ECD_02017at 2070.993 kb on - strand, within ECD_02018at 2071.306 kb on - strand, within ECD_02018at 2071.526 kb on - strand, within ECD_02018at 2071.548 kb on - strand, within ECD_02018at 2071.554 kb on - strand, within ECD_02018at 2071.608 kb on - strand, within ECD_02018

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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2,069,752 - ECD_02017 0.11 -1.8
2,069,752 - ECD_02017 0.11 +0.1
2,069,811 - ECD_02017 0.17 +1.5
2,069,852 - ECD_02017 0.21 -0.1
2,070,049 - ECD_02017 0.39 -0.3
2,070,184 - ECD_02017 0.52 +1.1
2,070,993 - ECD_02018 0.20 +1.2
2,071,306 - ECD_02018 0.43 +1.9
2,071,526 - ECD_02018 0.59 +1.2
2,071,548 - ECD_02018 0.61 +1.0
2,071,554 - ECD_02018 0.61 +2.1
2,071,608 - ECD_02018 0.65 +2.0

Or see this region's nucleotide sequence