Strain Fitness in Escherichia coli BL21 around ECD_01897

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01896 and ECD_t00035 are separated by 4 nucleotidesECD_t00035 and ECD_01897 are separated by 37 nucleotidesECD_01897 and ECD_01898 are separated by 101 nucleotides ECD_01896: ECD_01896 - putative multdrug exporter, MATE family, at 1,963,351 to 1,964,994 _01896 ECD_t00035: ECD_t00035 - tRNA-Asn, at 1,964,999 to 1,965,074 _t00035 ECD_01897: ECD_01897 - ssuEADCB/tauABCD operon transcriptional activator, at 1,965,112 to 1,966,062 _01897 ECD_01898: ECD_01898 - nitrogen assimilation regulon transcriptional regulator; autorepressor, at 1,966,164 to 1,967,081 _01898 Position (kb) 1965 1966 1967Strain fitness (log2 ratio) -1 0 1 2 3at 1964.542 kb on - strand, within ECD_01896at 1965.115 kb on + strandat 1965.397 kb on + strand, within ECD_01897at 1965.558 kb on + strand, within ECD_01897at 1965.828 kb on + strand, within ECD_01897at 1966.711 kb on + strand, within ECD_01898at 1966.712 kb on - strand, within ECD_01898at 1966.867 kb on - strand, within ECD_01898

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,964,542 - ECD_01896 0.72 +0.6
1,965,115 + +1.7
1,965,397 + ECD_01897 0.30 +3.0
1,965,558 + ECD_01897 0.47 +0.4
1,965,828 + ECD_01897 0.75 +1.1
1,966,711 + ECD_01898 0.60 -0.6
1,966,712 - ECD_01898 0.60 -0.1
1,966,867 - ECD_01898 0.77 -0.8

Or see this region's nucleotide sequence