Strain Fitness in Escherichia coli BL21 around ECD_01851

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01850 and ECD_01851 overlap by 8 nucleotidesECD_01851 and ECD_01852 are separated by 201 nucleotidesECD_01852 and ECD_01853 are separated by 10 nucleotides ECD_01850: ECD_01850 - putative flagellar export pore protein, at 1,908,890 to 1,910,968 _01850 ECD_01851: ECD_01851 - flagellin export apparatus, substrate specificity protein, at 1,910,961 to 1,912,109 _01851 ECD_01852: ECD_01852 - chemotaxis regulator, protein phosphatase for CheY, at 1,912,311 to 1,912,955 _01852 ECD_01853: ECD_01853 - chemotaxis regulator transmitting signal to flagellar motor component, at 1,912,966 to 1,913,355 _01853 Position (kb) 1910 1911 1912 1913Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1910.088 kb on - strand, within ECD_01850at 1910.243 kb on - strand, within ECD_01850at 1910.243 kb on - strand, within ECD_01850at 1910.243 kb on - strand, within ECD_01850at 1910.243 kb on - strand, within ECD_01850at 1910.363 kb on - strand, within ECD_01850at 1910.456 kb on - strand, within ECD_01850at 1910.492 kb on - strand, within ECD_01850at 1910.546 kb on - strand, within ECD_01850at 1910.705 kb on - strand, within ECD_01850at 1910.705 kb on - strand, within ECD_01850at 1910.825 kb on - strandat 1911.021 kb on - strandat 1911.278 kb on - strand, within ECD_01851at 1911.393 kb on - strand, within ECD_01851at 1911.903 kb on - strand, within ECD_01851at 1911.903 kb on - strand, within ECD_01851at 1912.131 kb on - strandat 1912.131 kb on - strandat 1912.131 kb on - strandat 1912.131 kb on - strandat 1912.228 kb on + strandat 1912.574 kb on + strand, within ECD_01852at 1912.786 kb on + strand, within ECD_01852at 1912.786 kb on + strand, within ECD_01852

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,910,088 - ECD_01850 0.58 +0.2
1,910,243 - ECD_01850 0.65 +0.8
1,910,243 - ECD_01850 0.65 +1.9
1,910,243 - ECD_01850 0.65 +0.5
1,910,243 - ECD_01850 0.65 -0.2
1,910,363 - ECD_01850 0.71 +2.5
1,910,456 - ECD_01850 0.75 +0.3
1,910,492 - ECD_01850 0.77 +0.7
1,910,546 - ECD_01850 0.80 +0.0
1,910,705 - ECD_01850 0.87 +0.7
1,910,705 - ECD_01850 0.87 -0.3
1,910,825 - -1.9
1,911,021 - -1.1
1,911,278 - ECD_01851 0.28 -1.6
1,911,393 - ECD_01851 0.38 +0.8
1,911,903 - ECD_01851 0.82 -0.8
1,911,903 - ECD_01851 0.82 -0.7
1,912,131 - +1.6
1,912,131 - +0.8
1,912,131 - +1.2
1,912,131 - +1.8
1,912,228 + -0.2
1,912,574 + ECD_01852 0.41 +0.7
1,912,786 + ECD_01852 0.74 -0.3
1,912,786 + ECD_01852 0.74 +2.9

Or see this region's nucleotide sequence