Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01850 and ECD_01851 overlap by 8 nucleotides ECD_01851 and ECD_01852 are separated by 201 nucleotides ECD_01852 and ECD_01853 are separated by 10 nucleotides
ECD_01850: ECD_01850 - putative flagellar export pore protein, at 1,908,890 to 1,910,968
_01850
ECD_01851: ECD_01851 - flagellin export apparatus, substrate specificity protein, at 1,910,961 to 1,912,109
_01851
ECD_01852: ECD_01852 - chemotaxis regulator, protein phosphatase for CheY, at 1,912,311 to 1,912,955
_01852
ECD_01853: ECD_01853 - chemotaxis regulator transmitting signal to flagellar motor component, at 1,912,966 to 1,913,355
_01853
Position (kb)
1910
1911
1912
1913 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1910.088 kb on - strand, within ECD_01850 at 1910.243 kb on - strand, within ECD_01850 at 1910.243 kb on - strand, within ECD_01850 at 1910.243 kb on - strand, within ECD_01850 at 1910.243 kb on - strand, within ECD_01850 at 1910.363 kb on - strand, within ECD_01850 at 1910.456 kb on - strand, within ECD_01850 at 1910.492 kb on - strand, within ECD_01850 at 1910.546 kb on - strand, within ECD_01850 at 1910.705 kb on - strand, within ECD_01850 at 1910.705 kb on - strand, within ECD_01850 at 1910.825 kb on - strand at 1911.021 kb on - strand at 1911.278 kb on - strand, within ECD_01851 at 1911.393 kb on - strand, within ECD_01851 at 1911.903 kb on - strand, within ECD_01851 at 1911.903 kb on - strand, within ECD_01851 at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.228 kb on + strand at 1912.574 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 1,910,088 - ECD_01850 0.58 +0.2 1,910,243 - ECD_01850 0.65 +0.8 1,910,243 - ECD_01850 0.65 +1.9 1,910,243 - ECD_01850 0.65 +0.5 1,910,243 - ECD_01850 0.65 -0.2 1,910,363 - ECD_01850 0.71 +2.5 1,910,456 - ECD_01850 0.75 +0.3 1,910,492 - ECD_01850 0.77 +0.7 1,910,546 - ECD_01850 0.80 +0.0 1,910,705 - ECD_01850 0.87 +0.7 1,910,705 - ECD_01850 0.87 -0.3 1,910,825 - -1.9 1,911,021 - -1.1 1,911,278 - ECD_01851 0.28 -1.6 1,911,393 - ECD_01851 0.38 +0.8 1,911,903 - ECD_01851 0.82 -0.8 1,911,903 - ECD_01851 0.82 -0.7 1,912,131 - +1.6 1,912,131 - +0.8 1,912,131 - +1.2 1,912,131 - +1.8 1,912,228 + -0.2 1,912,574 + ECD_01852 0.41 +0.7 1,912,786 + ECD_01852 0.74 -0.3 1,912,786 + ECD_01852 0.74 +2.9
Or see this region's nucleotide sequence