Strain Fitness in Escherichia coli BL21 around ECD_01848

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01847 and ECD_01848 are separated by 176 nucleotidesECD_01848 and ECD_01849 are separated by 119 nucleotidesECD_01849 and ECD_01850 overlap by 1 nucleotides ECD_01847: ECD_01847 - arginyl-tRNA synthetase, at 1,905,980 to 1,907,713 _01847 ECD_01848: ECD_01848 - uncharacterized protein, at 1,907,890 to 1,908,378 _01848 ECD_01849: ECD_01849 - proton seal during flagellar secretion, at 1,908,498 to 1,908,890 _01849 ECD_01850: ECD_01850 - putative flagellar export pore protein, at 1,908,890 to 1,910,968 _01850 Position (kb) 1907 1908 1909Strain fitness (log2 ratio) -2 -1 0 1at 1907.777 kb on - strandat 1908.643 kb on - strand, within ECD_01849at 1908.811 kb on - strand, within ECD_01849at 1908.816 kb on - strand, within ECD_01849at 1908.871 kb on - strandat 1908.871 kb on - strandat 1908.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,907,777 - +1.7
1,908,643 - ECD_01849 0.37 -2.1
1,908,811 - ECD_01849 0.80 +0.0
1,908,816 - ECD_01849 0.81 -1.1
1,908,871 - +0.3
1,908,871 - -0.1
1,908,877 - -0.9

Or see this region's nucleotide sequence