Strain Fitness in Escherichia coli BL21 around ECD_01844

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01843 and ECD_01844 are separated by 24 nucleotidesECD_01844 and ECD_01845 are separated by 387 nucleotides ECD_01843: ECD_01843 - trimethylamine N-oxide reductase system III, catalytic subunit, at 1,900,496 to 1,902,925 _01843 ECD_01844: ECD_01844 - TMAO reductase III (TorYZ), cytochrome c-type subunit, at 1,902,950 to 1,904,050 _01844 ECD_01845: ECD_01845 - copper homeostasis protein, at 1,904,438 to 1,905,184 _01845 Position (kb) 1902 1903 1904 1905Strain fitness (log2 ratio) -1 0 1 2at 1902.345 kb on + strand, within ECD_01843at 1902.403 kb on - strand, within ECD_01843at 1902.443 kb on - strand, within ECD_01843at 1902.444 kb on + strand, within ECD_01843at 1902.445 kb on - strand, within ECD_01843at 1902.541 kb on + strand, within ECD_01843at 1902.569 kb on + strand, within ECD_01843at 1902.570 kb on - strand, within ECD_01843at 1902.597 kb on + strand, within ECD_01843at 1902.597 kb on + strand, within ECD_01843at 1902.598 kb on - strand, within ECD_01843at 1902.598 kb on - strand, within ECD_01843at 1902.714 kb on - strandat 1903.078 kb on - strand, within ECD_01844at 1903.141 kb on - strand, within ECD_01844at 1903.265 kb on - strand, within ECD_01844at 1904.540 kb on - strand, within ECD_01845at 1904.540 kb on - strand, within ECD_01845at 1904.540 kb on - strand, within ECD_01845at 1904.540 kb on - strand, within ECD_01845at 1904.597 kb on - strand, within ECD_01845

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,902,345 + ECD_01843 0.76 +0.9
1,902,403 - ECD_01843 0.78 -0.5
1,902,443 - ECD_01843 0.80 +0.7
1,902,444 + ECD_01843 0.80 +0.4
1,902,445 - ECD_01843 0.80 -0.4
1,902,541 + ECD_01843 0.84 +1.2
1,902,569 + ECD_01843 0.85 +0.2
1,902,570 - ECD_01843 0.85 +0.9
1,902,597 + ECD_01843 0.86 +0.3
1,902,597 + ECD_01843 0.86 +1.2
1,902,598 - ECD_01843 0.87 +0.7
1,902,598 - ECD_01843 0.87 +0.4
1,902,714 - +1.2
1,903,078 - ECD_01844 0.12 +1.0
1,903,141 - ECD_01844 0.17 -1.2
1,903,265 - ECD_01844 0.29 +2.4
1,904,540 - ECD_01845 0.14 +0.9
1,904,540 - ECD_01845 0.14 +0.8
1,904,540 - ECD_01845 0.14 -0.9
1,904,540 - ECD_01845 0.14 -1.4
1,904,597 - ECD_01845 0.21 +0.7

Or see this region's nucleotide sequence