Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01833 and ECD_01834 are separated by 1 nucleotides ECD_01834 and ECD_01835 are separated by 34 nucleotides ECD_01835 and ECD_01836 are separated by 28 nucleotides ECD_01836 and ECD_01837 are separated by 117 nucleotides
ECD_01833: ECD_01833 - DUF830 family protein, at 1,892,169 to 1,892,771
_01833
ECD_01834: ECD_01834 - component of RuvABC resolvasome, endonuclease, at 1,892,773 to 1,893,294
_01834
ECD_01835: ECD_01835 - UPF0082 family protein, at 1,893,329 to 1,894,069
_01835
ECD_01836: ECD_01836 - dihydroneopterin triphosphate pyrophosphatase, at 1,894,098 to 1,894,550
_01836
ECD_01837: ECD_01837 - aspartyl-tRNA synthetase, at 1,894,668 to 1,896,440
_01837
Position (kb)
1893
1894
1895 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1892.770 kb on - strand at 1892.923 kb on - strand, within ECD_01834 at 1893.318 kb on - strand at 1893.577 kb on - strand, within ECD_01835 at 1894.114 kb on - strand at 1894.114 kb on - strand at 1894.152 kb on - strand, within ECD_01836 at 1894.190 kb on - strand, within ECD_01836 at 1894.260 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.336 kb on - strand, within ECD_01836 at 1894.381 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.535 kb on - strand at 1894.542 kb on - strand at 1894.542 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.600 kb on - strand at 1894.600 kb on - strand at 1894.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 1,892,770 - -0.1 1,892,923 - ECD_01834 0.29 +0.7 1,893,318 - +1.9 1,893,577 - ECD_01835 0.33 +1.6 1,894,114 - +1.6 1,894,114 - +1.0 1,894,152 - ECD_01836 0.12 +1.8 1,894,190 - ECD_01836 0.20 +1.4 1,894,260 - ECD_01836 0.36 +1.9 1,894,291 - ECD_01836 0.43 +1.4 1,894,291 - ECD_01836 0.43 -0.6 1,894,291 - ECD_01836 0.43 +2.9 1,894,291 - ECD_01836 0.43 +1.5 1,894,336 - ECD_01836 0.53 +1.6 1,894,381 - ECD_01836 0.62 +1.0 1,894,502 - ECD_01836 0.89 +1.0 1,894,502 - ECD_01836 0.89 +2.7 1,894,502 - ECD_01836 0.89 +1.6 1,894,502 - ECD_01836 0.89 +1.9 1,894,535 - +0.5 1,894,542 - +1.0 1,894,542 - +1.5 1,894,592 - +1.3 1,894,592 - +0.5 1,894,592 - -0.3 1,894,592 - +1.2 1,894,592 - +2.3 1,894,592 - +0.3 1,894,592 - +2.1 1,894,592 - +0.9 1,894,592 - +0.8 1,894,596 - +2.1 1,894,596 - +2.1 1,894,596 - +1.5 1,894,596 - +1.4 1,894,596 - +0.9 1,894,596 - +1.5 1,894,600 - +1.0 1,894,600 - +2.1 1,894,667 - +1.7
Or see this region's nucleotide sequence