Strain Fitness in Escherichia coli BL21 around ECD_01606

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01604 and ECD_01605 are separated by 105 nucleotidesECD_01605 and ECD_01606 are separated by 43 nucleotidesECD_01606 and ECD_01607 are separated by 58 nucleotides ECD_01604: ECD_01604 - dipeptide and tripeptide permease A, at 1,657,965 to 1,659,467 _01604 ECD_01605: ECD_01605 - glutathionine S-transferase, at 1,659,573 to 1,660,178 _01605 ECD_01606: ECD_01606 - pyridoxamine kinase, at 1,660,222 to 1,661,085 _01606 ECD_01607: ECD_01607 - tyrosyl-tRNA synthetase, at 1,661,144 to 1,662,418 _01607 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -1 0 1at 1660.068 kb on + strand, within ECD_01605at 1660.613 kb on - strand, within ECD_01606at 1660.631 kb on - strand, within ECD_01606at 1660.873 kb on - strand, within ECD_01606at 1661.046 kb on - strandat 1661.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,660,068 + ECD_01605 0.82 +0.6
1,660,613 - ECD_01606 0.45 +0.0
1,660,631 - ECD_01606 0.47 -0.1
1,660,873 - ECD_01606 0.75 +0.6
1,661,046 - -0.4
1,661,138 - +0.6

Or see this region's nucleotide sequence