Strain Fitness in Escherichia coli BL21 around ECD_01453

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01452 and ECD_01453 are separated by 44 nucleotidesECD_01453 and ECD_01454 are separated by 37 nucleotides ECD_01452: ECD_01452 - putative periplasmic M16 family zinc metalloendopeptidase, at 1,527,888 to 1,530,683 _01452 ECD_01453: ECD_01453 - putative TonB-dependent outer membrane receptor, at 1,530,728 to 1,533,100 _01453 ECD_01454: ECD_01454 - putative multidrug ABC transporter permease/ATPase, at 1,533,138 to 1,534,823 _01454 Position (kb) 1530 1531 1532 1533 1534Strain fitness (log2 ratio) -1 0 1 2 3at 1529.958 kb on + strand, within ECD_01452at 1529.959 kb on - strand, within ECD_01452at 1530.192 kb on - strand, within ECD_01452at 1530.432 kb on - strandat 1531.321 kb on + strand, within ECD_01453at 1532.995 kb on - strandat 1533.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,529,958 + ECD_01452 0.74 +1.5
1,529,959 - ECD_01452 0.74 -0.4
1,530,192 - ECD_01452 0.82 +0.2
1,530,432 - +3.3
1,531,321 + ECD_01453 0.25 +0.9
1,532,995 - +2.5
1,533,069 - +1.4

Or see this region's nucleotide sequence