Strain Fitness in Escherichia coli BL21 around ECD_01445

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01444 and ECD_01445 are separated by 1 nucleotidesECD_01445 and ECD_01446 are separated by 13 nucleotidesECD_01446 and ECD_01447 are separated by 257 nucleotides ECD_01444: ECD_01444 - D,D-dipeptide ABC transporter permease, at 1,515,375 to 1,516,397 _01444 ECD_01445: ECD_01445 - D,D-dipeptide ABC transporter periplasmic binding protein, at 1,516,399 to 1,517,949 _01445 ECD_01446: ECD_01446 - D-ala-D-ala dipeptidase, Zn-dependent, at 1,517,963 to 1,518,544 _01446 ECD_01447: ECD_01447 - oxygen sensor, c-di-GMP phosphodiesterase, heme-regulated; cold- and stationary phase-induced bioflim regulator, at 1,518,802 to 1,521,201 _01447 Position (kb) 1516 1517 1518Strain fitness (log2 ratio) -1 0 1 2at 1515.419 kb on - strandat 1516.038 kb on + strand, within ECD_01444at 1516.207 kb on + strand, within ECD_01444at 1516.405 kb on - strandat 1516.511 kb on + strandat 1516.687 kb on - strand, within ECD_01445at 1516.733 kb on + strand, within ECD_01445at 1516.837 kb on - strand, within ECD_01445at 1518.256 kb on + strand, within ECD_01446at 1518.283 kb on - strand, within ECD_01446at 1518.452 kb on - strand, within ECD_01446at 1518.544 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,515,419 - -0.5
1,516,038 + ECD_01444 0.65 +2.3
1,516,207 + ECD_01444 0.81 +1.5
1,516,405 - +0.2
1,516,511 + +0.3
1,516,687 - ECD_01445 0.19 +0.6
1,516,733 + ECD_01445 0.22 +2.2
1,516,837 - ECD_01445 0.28 +0.7
1,518,256 + ECD_01446 0.50 +1.2
1,518,283 - ECD_01446 0.55 +1.5
1,518,452 - ECD_01446 0.84 +0.1
1,518,544 + +1.4

Or see this region's nucleotide sequence