Strain Fitness in Escherichia coli BL21 around ECD_01408

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01406 and ECD_01407 are separated by 197 nucleotidesECD_01407 and ECD_01408 are separated by 35 nucleotidesECD_01408 and ECD_01409 are separated by 241 nucleotides ECD_01406: ECD_01406 - curcumin/dihydrocurcumin reductase, NADPH-dependent, at 1,473,090 to 1,474,127 _01406 ECD_01407: ECD_01407 - colanic acid and biofilm gene transcriptional regulator, MqsR-controlled, at 1,474,325 to 1,474,990 _01407 ECD_01408: ECD_01408 - putative iron outer membrane transporter, at 1,475,026 to 1,477,128 _01408 ECD_01409: ECD_01409 - ATP-binding protein, periplasmic, function unknown, at 1,477,370 to 1,478,431 _01409 Position (kb) 1475 1476 1477 1478Strain fitness (log2 ratio) -1 0 1 2at 1475.277 kb on - strand, within ECD_01408at 1475.319 kb on - strand, within ECD_01408at 1475.651 kb on - strand, within ECD_01408at 1475.927 kb on - strand, within ECD_01408at 1476.231 kb on - strand, within ECD_01408at 1476.247 kb on - strand, within ECD_01408at 1476.247 kb on - strand, within ECD_01408at 1476.537 kb on - strand, within ECD_01408at 1476.885 kb on - strand, within ECD_01408at 1477.377 kb on + strandat 1477.378 kb on - strandat 1477.513 kb on + strand, within ECD_01409

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,475,277 - ECD_01408 0.12 +0.3
1,475,319 - ECD_01408 0.14 +0.5
1,475,651 - ECD_01408 0.30 +0.1
1,475,927 - ECD_01408 0.43 -0.5
1,476,231 - ECD_01408 0.57 -0.7
1,476,247 - ECD_01408 0.58 -1.1
1,476,247 - ECD_01408 0.58 -0.8
1,476,537 - ECD_01408 0.72 +1.5
1,476,885 - ECD_01408 0.88 -1.2
1,477,377 + -0.5
1,477,378 - +2.3
1,477,513 + ECD_01409 0.13 +1.1

Or see this region's nucleotide sequence