Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01274 and ECD_01275 are separated by 211 nucleotides ECD_01275 and ECD_01276 are separated by 26 nucleotides ECD_01276 and ECD_01277 are separated by 274 nucleotides
ECD_01274: ECD_01274 - glutamate--putrescine ligase, at 1,345,856 to 1,347,274
_01274
ECD_01275: ECD_01275 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 1,347,486 to 1,348,250
_01275
ECD_01276: ECD_01276 - repressor for the divergent puu operons, putrescine inducible, at 1,348,277 to 1,348,834
_01276
ECD_01277: ECD_01277 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase, at 1,349,109 to 1,350,596
_01277
Position (kb)
1347
1348
1349 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1346.628 kb on - strand, within ECD_01274 at 1347.027 kb on - strand, within ECD_01274 at 1347.206 kb on - strand at 1347.252 kb on - strand at 1347.439 kb on + strand at 1347.718 kb on + strand, within ECD_01275 at 1347.718 kb on + strand, within ECD_01275 at 1347.718 kb on + strand, within ECD_01275 at 1347.718 kb on + strand, within ECD_01275 at 1348.030 kb on + strand, within ECD_01275 at 1348.030 kb on + strand, within ECD_01275 at 1348.096 kb on + strand, within ECD_01275 at 1348.141 kb on + strand, within ECD_01275 at 1348.189 kb on + strand at 1348.205 kb on + strand at 1348.451 kb on + strand, within ECD_01276 at 1348.451 kb on + strand, within ECD_01276 at 1348.451 kb on + strand, within ECD_01276 at 1348.530 kb on + strand, within ECD_01276 at 1348.668 kb on + strand, within ECD_01276 at 1348.750 kb on + strand, within ECD_01276 at 1348.750 kb on + strand, within ECD_01276 at 1348.750 kb on + strand, within ECD_01276 at 1348.816 kb on + strand at 1349.007 kb on + strand at 1349.036 kb on + strand at 1349.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 1,346,628 - ECD_01274 0.54 +1.2 1,347,027 - ECD_01274 0.83 +0.5 1,347,206 - -0.3 1,347,252 - +0.7 1,347,439 + +2.0 1,347,718 + ECD_01275 0.30 -1.0 1,347,718 + ECD_01275 0.30 +0.1 1,347,718 + ECD_01275 0.30 +1.4 1,347,718 + ECD_01275 0.30 -0.8 1,348,030 + ECD_01275 0.71 -0.3 1,348,030 + ECD_01275 0.71 +1.1 1,348,096 + ECD_01275 0.80 -1.1 1,348,141 + ECD_01275 0.86 -0.6 1,348,189 + -0.3 1,348,205 + -0.1 1,348,451 + ECD_01276 0.31 +1.9 1,348,451 + ECD_01276 0.31 +2.1 1,348,451 + ECD_01276 0.31 +2.6 1,348,530 + ECD_01276 0.45 +2.6 1,348,668 + ECD_01276 0.70 +0.9 1,348,750 + ECD_01276 0.85 +1.8 1,348,750 + ECD_01276 0.85 +3.5 1,348,750 + ECD_01276 0.85 +2.7 1,348,816 + -1.1 1,349,007 + +0.9 1,349,036 + +1.8 1,349,079 - +0.2
Or see this region's nucleotide sequence