Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01253 and ECD_01254 are separated by 63 nucleotides ECD_01254 and ECD_01255 are separated by 169 nucleotides ECD_01255 and ECD_01256 are separated by 148 nucleotides ECD_01256 and ECD_01257 are separated by 6 nucleotides
ECD_01253: ECD_01253 - aconitate hydratase 1; aconitase A, at 1,322,201 to 1,324,876
_01253
ECD_01254: ECD_01254 - GTP cyclohydrolase II, at 1,324,940 to 1,325,530
_01254
ECD_01255: ECD_01255 - phosphatidylglycerophosphatase B, at 1,325,700 to 1,326,464
_01255
ECD_01256: ECD_01256 - DUF1049 family inner membrane protein, function unknown, at 1,326,613 to 1,326,921
_01256
ECD_01257: ECD_01257 - LPS regulatory protein; putative modulator of LpxC proteolysis, at 1,326,928 to 1,328,097
_01257
Position (kb)
1325
1326
1327 Strain fitness (log2 ratio)
-1
0
1
2 at 1325.545 kb on - strand at 1325.545 kb on - strand at 1325.545 kb on - strand at 1325.567 kb on - strand at 1325.667 kb on + strand at 1326.135 kb on + strand, within ECD_01255 at 1326.263 kb on + strand, within ECD_01255 at 1326.340 kb on + strand, within ECD_01255 at 1326.340 kb on + strand, within ECD_01255 at 1326.340 kb on + strand, within ECD_01255 at 1326.344 kb on + strand, within ECD_01255 at 1326.345 kb on - strand, within ECD_01255 at 1326.702 kb on + strand, within ECD_01256
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 1,325,545 - +0.4 1,325,545 - +0.8 1,325,545 - +1.2 1,325,567 - +0.6 1,325,667 + +1.0 1,326,135 + ECD_01255 0.57 +1.4 1,326,263 + ECD_01255 0.74 +0.5 1,326,340 + ECD_01255 0.84 -0.5 1,326,340 + ECD_01255 0.84 -0.4 1,326,340 + ECD_01255 0.84 -0.1 1,326,344 + ECD_01255 0.84 +0.2 1,326,345 - ECD_01255 0.84 +0.2 1,326,702 + ECD_01256 0.29 +1.9
Or see this region's nucleotide sequence