Strain Fitness in Escherichia coli BL21 around ECD_01044

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01043 and ECD_01044 are separated by 7 nucleotidesECD_01044 and ECD_01045 are separated by 393 nucleotides ECD_01043: ECD_01043 - stationary phase cardiolipin synthase 3, at 1,108,922 to 1,110,343 _01043 ECD_01044: ECD_01044 - OPG biosynthetic transmembrane succinyltransferase, at 1,110,351 to 1,111,508 _01044 ECD_01045: ECD_01045 - OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase, at 1,111,902 to 1,113,437 _01045 Position (kb) 1110 1111 1112Strain fitness (log2 ratio) -1 0 1 2 3at 1109.783 kb on + strand, within ECD_01043at 1110.180 kb on - strand, within ECD_01043at 1110.465 kb on + strandat 1110.524 kb on - strand, within ECD_01044at 1110.563 kb on - strand, within ECD_01044at 1110.733 kb on - strand, within ECD_01044at 1111.404 kb on - strandat 1111.404 kb on - strandat 1111.509 kb on - strandat 1111.627 kb on + strandat 1111.666 kb on + strandat 1111.683 kb on - strandat 1111.838 kb on - strandat 1112.185 kb on + strand, within ECD_01045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
remove
1,109,783 + ECD_01043 0.61 +2.3
1,110,180 - ECD_01043 0.88 +1.2
1,110,465 + -0.3
1,110,524 - ECD_01044 0.15 -0.7
1,110,563 - ECD_01044 0.18 +0.9
1,110,733 - ECD_01044 0.33 +0.7
1,111,404 - +2.9
1,111,404 - +0.5
1,111,509 - +0.5
1,111,627 + +0.8
1,111,666 + +0.1
1,111,683 - +0.0
1,111,838 - +0.3
1,112,185 + ECD_01045 0.18 -0.7

Or see this region's nucleotide sequence