Strain Fitness in Escherichia coli BL21 around ECD_01036

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01034 and ECD_01035 are separated by 26 nucleotidesECD_01035 and ECD_01036 are separated by 24 nucleotidesECD_01036 and ECD_01037 are separated by 4 nucleotides ECD_01034: ECD_01034 - curli production assembly/transport outer membrane lipoprotein, at 1,103,418 to 1,104,251 _01034 ECD_01035: ECD_01035 - curli nucleation outer membrane protein, at 1,104,278 to 1,104,694 _01035 ECD_01036: ECD_01036 - curlin secretion specificity factor, at 1,104,719 to 1,105,108 _01036 ECD_01037: ECD_01037 - csgBAC operon transcriptional regulator, at 1,105,113 to 1,105,763 _01037 Position (kb) 1104 1105 1106Strain fitness (log2 ratio) -1 0 1at 1105.327 kb on + strand, within ECD_01037

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
remove
1,105,327 + ECD_01037 0.33 -0.3

Or see this region's nucleotide sequence