Strain Fitness in Escherichia coli BL21 around ECD_00955

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00954 and ECD_00955 are separated by 4 nucleotidesECD_00955 and ECD_00956 overlap by 4 nucleotidesECD_00956 and ECD_00957 are separated by 255 nucleotides ECD_00954: ECD_00954 - paraquat-inducible, SoxRS-regulated inner membrane protein, at 1,017,090 to 1,018,343 _00954 ECD_00955: ECD_00955 - paraquat-inducible, SoxRS-regulated MCE domain protein, at 1,018,348 to 1,019,988 _00955 ECD_00956: ECD_00956 - DUF330 family putative lipoprotein, at 1,019,985 to 1,020,548 _00956 ECD_00957: ECD_00957 - ribosome modulation factor, at 1,020,804 to 1,020,971 _00957 Position (kb) 1018 1019 1020Strain fitness (log2 ratio) -1 0 1at 1017.582 kb on + strand, within ECD_00954at 1017.770 kb on + strand, within ECD_00954at 1018.026 kb on - strand, within ECD_00954at 1018.028 kb on + strand, within ECD_00954at 1018.141 kb on + strand, within ECD_00954at 1018.217 kb on + strand, within ECD_00954at 1018.217 kb on + strand, within ECD_00954at 1018.359 kb on + strandat 1018.726 kb on + strand, within ECD_00955at 1018.969 kb on + strand, within ECD_00955at 1019.840 kb on - strandat 1020.174 kb on + strand, within ECD_00956at 1020.195 kb on + strand, within ECD_00956at 1020.734 kb on + strandat 1020.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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1,017,582 + ECD_00954 0.39 -0.3
1,017,770 + ECD_00954 0.54 -0.0
1,018,026 - ECD_00954 0.75 -0.8
1,018,028 + ECD_00954 0.75 +0.1
1,018,141 + ECD_00954 0.84 +0.8
1,018,217 + ECD_00954 0.90 +0.3
1,018,217 + ECD_00954 0.90 -1.1
1,018,359 + -1.5
1,018,726 + ECD_00955 0.23 +0.3
1,018,969 + ECD_00955 0.38 +1.5
1,019,840 - -0.7
1,020,174 + ECD_00956 0.34 -0.1
1,020,195 + ECD_00956 0.37 +0.4
1,020,734 + +1.6
1,020,752 + +0.3

Or see this region's nucleotide sequence