Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00936 and ECD_00937 are separated by 42 nucleotides ECD_00937 and ECD_00938 overlap by 4 nucleotides ECD_00938 and ECD_00939 are separated by 10 nucleotides
ECD_00936: ECD_00936 - aminopeptidase N, at 995,711 to 998,323
_00936
ECD_00937: ECD_00937 - aliphatic sulfonate ABC transporter ATPase, at 998,366 to 999,133
_00937
ECD_00938: ECD_00938 - aliphatic sulfonate ABC transporter permease, at 999,130 to 999,921
_00938
ECD_00939: ECD_00939 - alkanesulfonate monooxygenase, FMNH(2)-dependent, at 999,932 to 1,001,077
_00939
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -2
-1
0
1 at 997.433 kb on + strand, within ECD_00936 at 997.433 kb on + strand, within ECD_00936 at 997.648 kb on + strand, within ECD_00936 at 997.649 kb on - strand, within ECD_00936 at 997.837 kb on + strand, within ECD_00936 at 997.951 kb on + strand, within ECD_00936 at 998.053 kb on + strand, within ECD_00936 at 998.294 kb on + strand at 998.304 kb on + strand at 998.577 kb on - strand, within ECD_00937 at 998.578 kb on - strand, within ECD_00937 at 998.582 kb on - strand, within ECD_00937 at 998.637 kb on - strand, within ECD_00937 at 999.084 kb on - strand at 999.128 kb on - strand at 999.238 kb on - strand, within ECD_00938 at 999.441 kb on - strand, within ECD_00938 at 999.504 kb on - strand, within ECD_00938 at 999.958 kb on + strand at 1000.123 kb on - strand, within ECD_00939
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 997,433 + ECD_00936 0.66 -0.5 997,433 + ECD_00936 0.66 +0.4 997,648 + ECD_00936 0.74 +1.3 997,649 - ECD_00936 0.74 +0.6 997,837 + ECD_00936 0.81 -1.0 997,951 + ECD_00936 0.86 -1.3 998,053 + ECD_00936 0.90 -0.1 998,294 + -2.3 998,304 + -1.0 998,577 - ECD_00937 0.27 +1.1 998,578 - ECD_00937 0.28 +0.0 998,582 - ECD_00937 0.28 +0.5 998,637 - ECD_00937 0.35 +1.3 999,084 - +0.1 999,128 - +1.3 999,238 - ECD_00938 0.14 -0.7 999,441 - ECD_00938 0.39 -1.1 999,504 - ECD_00938 0.47 -1.3 999,958 + -0.5 1,000,123 - ECD_00939 0.17 +1.3
Or see this region's nucleotide sequence