Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00899 and ECD_00900 are separated by 1 nucleotides ECD_00900 and ECD_00901 are separated by 34 nucleotides ECD_00901 and ECD_00902 are separated by 313 nucleotides
ECD_00899: ECD_00899 - dimethyl sulfoxide reductase, anaerobic, subunit B, at 948,505 to 949,122
_00899
ECD_00900: ECD_00900 - dimethyl sulfoxide reductase, anaerobic, subunit C, at 949,124 to 949,987
_00900
ECD_00901: ECD_00901 - putative isochorismatase family hydrolase, at 950,022 to 950,648
_00901
ECD_00902: ECD_00902 - putative MFS transporter, inner membrane protein, at 950,962 to 952,110
_00902
Position (kb) 950
951 Strain fitness (log2 ratio) -2
-1
0
1
2 at 949.182 kb on + strand at 949.310 kb on - strand, within ECD_00900 at 949.753 kb on + strand, within ECD_00900 at 949.790 kb on + strand, within ECD_00900 at 949.860 kb on + strand, within ECD_00900 at 949.985 kb on + strand at 950.111 kb on + strand, within ECD_00901 at 950.493 kb on + strand, within ECD_00901 at 950.675 kb on + strand at 950.675 kb on + strand at 950.676 kb on - strand at 950.718 kb on + strand at 950.730 kb on - strand at 951.109 kb on + strand, within ECD_00902 at 951.148 kb on + strand, within ECD_00902 at 951.148 kb on + strand, within ECD_00902 at 951.149 kb on - strand, within ECD_00902 at 951.181 kb on + strand, within ECD_00902 at 951.364 kb on + strand, within ECD_00902 at 951.364 kb on + strand, within ECD_00902 at 951.364 kb on + strand, within ECD_00902 at 951.365 kb on - strand, within ECD_00902 at 951.379 kb on + strand, within ECD_00902 at 951.379 kb on + strand, within ECD_00902 at 951.617 kb on + strand, within ECD_00902 at 951.618 kb on - strand, within ECD_00902
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 949,182 + -0.5 949,310 - ECD_00900 0.22 +0.4 949,753 + ECD_00900 0.73 -0.2 949,790 + ECD_00900 0.77 +0.6 949,860 + ECD_00900 0.85 -1.5 949,985 + -0.4 950,111 + ECD_00901 0.14 -1.4 950,493 + ECD_00901 0.75 +1.8 950,675 + -2.3 950,675 + +0.3 950,676 - -1.4 950,718 + -1.3 950,730 - -0.6 951,109 + ECD_00902 0.13 +0.1 951,148 + ECD_00902 0.16 -0.2 951,148 + ECD_00902 0.16 -1.9 951,149 - ECD_00902 0.16 +0.5 951,181 + ECD_00902 0.19 -0.2 951,364 + ECD_00902 0.35 +2.1 951,364 + ECD_00902 0.35 +1.8 951,364 + ECD_00902 0.35 +1.6 951,365 - ECD_00902 0.35 -0.4 951,379 + ECD_00902 0.36 -1.0 951,379 + ECD_00902 0.36 +0.2 951,617 + ECD_00902 0.57 -0.7 951,618 - ECD_00902 0.57 +2.1
Or see this region's nucleotide sequence