Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00898 and ECD_00899 are separated by 10 nucleotides ECD_00899 and ECD_00900 are separated by 1 nucleotides ECD_00900 and ECD_00901 are separated by 34 nucleotides
ECD_00898: ECD_00898 - dimethyl sulfoxide reductase, anaerobic, subunit A, at 946,050 to 948,494
_00898
ECD_00899: ECD_00899 - dimethyl sulfoxide reductase, anaerobic, subunit B, at 948,505 to 949,122
_00899
ECD_00900: ECD_00900 - dimethyl sulfoxide reductase, anaerobic, subunit C, at 949,124 to 949,987
_00900
ECD_00901: ECD_00901 - putative isochorismatase family hydrolase, at 950,022 to 950,648
_00901
Position (kb) 948
949
950 Strain fitness (log2 ratio) -2
-1
0
1 at 947.695 kb on - strand, within ECD_00898 at 948.082 kb on - strand, within ECD_00898 at 948.154 kb on - strand, within ECD_00898 at 948.177 kb on + strand, within ECD_00898 at 948.410 kb on + strand at 948.415 kb on + strand at 948.464 kb on + strand at 948.689 kb on - strand, within ECD_00899 at 948.705 kb on + strand, within ECD_00899 at 948.870 kb on + strand, within ECD_00899 at 949.182 kb on + strand at 949.310 kb on - strand, within ECD_00900 at 949.753 kb on + strand, within ECD_00900 at 949.790 kb on + strand, within ECD_00900 at 949.860 kb on + strand, within ECD_00900 at 949.985 kb on + strand at 950.111 kb on + strand, within ECD_00901
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 947,695 - ECD_00898 0.67 -0.1 948,082 - ECD_00898 0.83 -0.2 948,154 - ECD_00898 0.86 -0.2 948,177 + ECD_00898 0.87 -2.2 948,410 + -0.9 948,415 + -0.1 948,464 + -0.5 948,689 - ECD_00899 0.30 -1.5 948,705 + ECD_00899 0.32 -0.2 948,870 + ECD_00899 0.59 -0.9 949,182 + -0.5 949,310 - ECD_00900 0.22 +0.4 949,753 + ECD_00900 0.73 -0.2 949,790 + ECD_00900 0.77 +0.6 949,860 + ECD_00900 0.85 -1.5 949,985 + -0.4 950,111 + ECD_00901 0.14 -1.4
Or see this region's nucleotide sequence