Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00894 and ECD_00895 are separated by 154 nucleotides ECD_00895 and ECD_00896 are separated by 10 nucleotides ECD_00896 and ECD_00897 are separated by 90 nucleotides
ECD_00894: ECD_00894 - DNA translocase at septal ring sorting daughter chromsomes, at 938,280 to 942,308
_00894
ECD_00895: ECD_00895 - lipoprotein chaperone, at 942,463 to 943,074
_00895
ECD_00896: ECD_00896 - recombination intermediate processing DNA-dependent ATPase, at 943,085 to 944,428
_00896
ECD_00897: ECD_00897 - seryl-tRNA synthetase, at 944,519 to 945,811
_00897
Position (kb) 943
944
945 Strain fitness (log2 ratio) -1
0
1 at 942.355 kb on + strand at 942.355 kb on + strand at 943.068 kb on + strand at 943.068 kb on + strand at 943.240 kb on + strand, within ECD_00896 at 943.324 kb on + strand, within ECD_00896 at 943.602 kb on + strand, within ECD_00896 at 943.605 kb on + strand, within ECD_00896 at 943.762 kb on + strand, within ECD_00896 at 943.873 kb on + strand, within ECD_00896 at 943.950 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 944.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 942,355 + -0.2 942,355 + -0.7 943,068 + +0.2 943,068 + +0.6 943,240 + ECD_00896 0.12 +0.6 943,324 + ECD_00896 0.18 -0.8 943,602 + ECD_00896 0.38 +1.1 943,605 + ECD_00896 0.39 -0.3 943,762 + ECD_00896 0.50 -1.2 943,873 + ECD_00896 0.59 -0.7 943,950 + ECD_00896 0.64 +0.9 943,952 + ECD_00896 0.65 -1.2 943,952 + ECD_00896 0.65 -0.1 943,952 + ECD_00896 0.65 -1.4 943,952 + ECD_00896 0.65 -0.1 944,297 + +1.1
Or see this region's nucleotide sequence