Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00892 and ECD_00893 are separated by 544 nucleotides ECD_00893 and ECD_00894 are separated by 134 nucleotides
ECD_00892: ECD_00892 - thioredoxin reductase, FAD/NAD(P)-binding, at 936,141 to 937,106
_00892
ECD_00893: ECD_00893 - leucine-responsive global transcriptional regulator, at 937,651 to 938,145
_00893
ECD_00894: ECD_00894 - DNA translocase at septal ring sorting daughter chromsomes, at 938,280 to 942,308
_00894
Position (kb) 937
938
939 Strain fitness (log2 ratio) -2
-1
0
1
2 at 937.174 kb on + strand at 937.400 kb on + strand at 937.406 kb on + strand at 937.406 kb on + strand at 937.408 kb on + strand at 937.408 kb on + strand at 937.428 kb on + strand at 937.432 kb on + strand at 937.432 kb on + strand at 937.459 kb on + strand at 937.463 kb on + strand at 937.464 kb on - strand at 937.570 kb on + strand at 937.623 kb on - strand at 937.646 kb on + strand at 937.655 kb on + strand at 937.701 kb on + strand, within ECD_00893 at 937.710 kb on + strand, within ECD_00893 at 937.833 kb on + strand, within ECD_00893 at 937.855 kb on + strand, within ECD_00893 at 937.890 kb on + strand, within ECD_00893 at 937.890 kb on + strand, within ECD_00893 at 937.993 kb on + strand, within ECD_00893 at 938.029 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.170 kb on + strand at 938.170 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 937,174 + -2.2 937,400 + +1.9 937,406 + +1.2 937,406 + +0.5 937,408 + +1.0 937,408 + +0.9 937,428 + -0.3 937,432 + +0.2 937,432 + +1.2 937,459 + +1.8 937,463 + -0.3 937,464 - -0.2 937,570 + +1.5 937,623 - -1.0 937,646 + -0.2 937,655 + +0.8 937,701 + ECD_00893 0.10 +1.3 937,710 + ECD_00893 0.12 +0.9 937,833 + ECD_00893 0.37 +1.3 937,855 + ECD_00893 0.41 +0.5 937,890 + ECD_00893 0.48 +2.0 937,890 + ECD_00893 0.48 +1.2 937,993 + ECD_00893 0.69 +1.2 938,029 + ECD_00893 0.76 +1.1 938,089 + ECD_00893 0.88 -0.1 938,089 + ECD_00893 0.88 +0.5 938,089 + ECD_00893 0.88 +0.1 938,089 + ECD_00893 0.88 +1.5 938,089 + ECD_00893 0.88 -1.0 938,170 + +0.5 938,170 + +0.5
Or see this region's nucleotide sequence