Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00884 and ECD_00885 are separated by 72 nucleotides ECD_00885 and ECD_00886 are separated by 322 nucleotides ECD_00886 and ECD_00887 are separated by 30 nucleotides ECD_00887 and ECD_t00022 are separated by 697 nucleotides
ECD_00884: ECD_00884 - macrolide ABC transporter peremase/ATPase, at 925,050 to 926,996
_00884
ECD_00885: ECD_00885 - inhibitor of DNA replication, cold shock protein-like protein, at 927,069 to 927,293
_00885
ECD_00886: ECD_00886 - regulatory protein for ClpA substrate specificity, at 927,616 to 927,936
_00886
ECD_00887: ECD_00887 - ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity, at 927,967 to 930,243
_00887
ECD_t00022: ECD_t00022 - tRNA-Ser, at 930,941 to 931,028
_t00022
Position (kb) 927
928
929
930
931 Strain fitness (log2 ratio) -1
0
1
2
3 at 926.974 kb on + strand at 927.104 kb on + strand, within ECD_00885 at 927.275 kb on + strand at 927.276 kb on - strand at 927.319 kb on + strand at 927.380 kb on - strand at 927.385 kb on + strand at 927.518 kb on + strand at 927.518 kb on + strand at 927.518 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.526 kb on + strand at 927.538 kb on + strand at 927.538 kb on + strand at 927.555 kb on + strand at 927.607 kb on + strand at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.699 kb on + strand, within ECD_00886 at 927.710 kb on + strand, within ECD_00886 at 927.779 kb on + strand, within ECD_00886 at 927.779 kb on + strand, within ECD_00886 at 927.999 kb on + strand at 928.038 kb on + strand at 928.038 kb on + strand at 928.330 kb on + strand, within ECD_00887 at 928.330 kb on + strand, within ECD_00887 at 928.330 kb on + strand, within ECD_00887 at 928.341 kb on + strand, within ECD_00887 at 928.702 kb on + strand, within ECD_00887 at 928.702 kb on + strand, within ECD_00887 at 928.936 kb on + strand, within ECD_00887 at 929.004 kb on + strand, within ECD_00887 at 929.128 kb on + strand, within ECD_00887 at 929.128 kb on + strand, within ECD_00887 at 929.388 kb on + strand, within ECD_00887 at 929.388 kb on + strand, within ECD_00887 at 929.389 kb on - strand, within ECD_00887 at 929.421 kb on + strand, within ECD_00887 at 929.483 kb on + strand, within ECD_00887 at 929.526 kb on + strand, within ECD_00887 at 929.526 kb on + strand, within ECD_00887 at 929.526 kb on + strand, within ECD_00887 at 929.584 kb on + strand, within ECD_00887 at 929.808 kb on + strand, within ECD_00887 at 929.874 kb on + strand, within ECD_00887 at 929.907 kb on + strand, within ECD_00887 at 930.896 kb on - strand at 931.156 kb on - strand at 931.156 kb on - strand at 931.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 926,974 + +1.1 927,104 + ECD_00885 0.16 -0.1 927,275 + +0.6 927,276 - +3.1 927,319 + -0.6 927,380 - +0.5 927,385 + +0.3 927,518 + +1.4 927,518 + -0.4 927,518 + -1.0 927,522 + +1.4 927,522 + -0.3 927,522 + -0.4 927,522 + +0.9 927,522 + +0.9 927,522 + +1.5 927,522 + -0.0 927,522 + +0.5 927,522 + +0.5 927,526 + -0.4 927,538 + -0.1 927,538 + +1.2 927,555 + +0.8 927,607 + +0.7 927,693 + ECD_00886 0.24 -0.1 927,693 + ECD_00886 0.24 +0.8 927,693 + ECD_00886 0.24 +1.0 927,693 + ECD_00886 0.24 +1.1 927,693 + ECD_00886 0.24 +0.5 927,699 + ECD_00886 0.26 -0.3 927,710 + ECD_00886 0.29 +0.0 927,779 + ECD_00886 0.51 -0.8 927,779 + ECD_00886 0.51 +1.7 927,999 + +0.1 928,038 + +1.8 928,038 + +0.1 928,330 + ECD_00887 0.16 -0.2 928,330 + ECD_00887 0.16 +0.6 928,330 + ECD_00887 0.16 +1.4 928,341 + ECD_00887 0.16 +0.5 928,702 + ECD_00887 0.32 -0.2 928,702 + ECD_00887 0.32 -0.2 928,936 + ECD_00887 0.43 +0.4 929,004 + ECD_00887 0.46 +0.8 929,128 + ECD_00887 0.51 +1.0 929,128 + ECD_00887 0.51 +1.9 929,388 + ECD_00887 0.62 +0.1 929,388 + ECD_00887 0.62 -0.4 929,389 - ECD_00887 0.62 -0.6 929,421 + ECD_00887 0.64 -0.1 929,483 + ECD_00887 0.67 +0.1 929,526 + ECD_00887 0.68 +0.2 929,526 + ECD_00887 0.68 +0.1 929,526 + ECD_00887 0.68 +1.4 929,584 + ECD_00887 0.71 +1.9 929,808 + ECD_00887 0.81 +1.0 929,874 + ECD_00887 0.84 +0.2 929,907 + ECD_00887 0.85 -0.4 930,896 - +1.1 931,156 - +0.0 931,156 - -0.2 931,160 - +0.6
Or see this region's nucleotide sequence