Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00871 and ECD_00872 overlap by 4 nucleotides ECD_00872 and ECD_00873 overlap by 4 nucleotides ECD_00873 and ECD_00874 are separated by 98 nucleotides
ECD_00871: ECD_00871 - UPF0145 family protein, at 909,297 to 909,620
_00871
ECD_00872: ECD_00872 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein, at 909,617 to 910,447
_00872
ECD_00873: ECD_00873 - putative NAD(P)H-dependent oxidoreductase, at 910,444 to 911,457
_00873
ECD_00874: ECD_00874 - putative NAD-dependent oxidoreductase, at 911,556 to 912,986
_00874
Position (kb) 910
911
912 Strain fitness (log2 ratio) -2
-1
0
1 at 909.490 kb on + strand, within ECD_00871 at 910.156 kb on - strand, within ECD_00872 at 910.254 kb on + strand, within ECD_00872 at 910.258 kb on + strand, within ECD_00872 at 910.258 kb on + strand, within ECD_00872 at 910.262 kb on - strand, within ECD_00872 at 910.262 kb on - strand, within ECD_00872 at 910.375 kb on - strand at 910.376 kb on + strand at 910.376 kb on + strand at 910.376 kb on + strand at 910.376 kb on + strand at 910.376 kb on + strand at 910.377 kb on - strand at 910.379 kb on - strand at 910.379 kb on - strand at 910.551 kb on + strand, within ECD_00873 at 910.552 kb on - strand, within ECD_00873 at 910.628 kb on - strand, within ECD_00873 at 910.836 kb on - strand, within ECD_00873 at 910.836 kb on - strand, within ECD_00873 at 910.839 kb on - strand, within ECD_00873 at 910.902 kb on + strand, within ECD_00873 at 910.903 kb on - strand, within ECD_00873 at 911.001 kb on + strand, within ECD_00873 at 911.130 kb on + strand, within ECD_00873 at 911.278 kb on - strand, within ECD_00873 at 911.558 kb on - strand at 911.612 kb on + strand at 911.697 kb on - strand at 911.764 kb on - strand, within ECD_00874 at 911.771 kb on + strand, within ECD_00874 at 911.772 kb on - strand, within ECD_00874 at 911.772 kb on - strand, within ECD_00874 at 911.772 kb on - strand, within ECD_00874 at 911.836 kb on + strand, within ECD_00874 at 911.836 kb on + strand, within ECD_00874 at 911.868 kb on - strand, within ECD_00874 at 911.868 kb on - strand, within ECD_00874 at 912.237 kb on - strand, within ECD_00874 at 912.237 kb on - strand, within ECD_00874 at 912.402 kb on + strand, within ECD_00874
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 909,490 + ECD_00871 0.60 -0.4 910,156 - ECD_00872 0.65 +0.6 910,254 + ECD_00872 0.77 +0.2 910,258 + ECD_00872 0.77 -0.1 910,258 + ECD_00872 0.77 +0.1 910,262 - ECD_00872 0.78 -0.8 910,262 - ECD_00872 0.78 -2.5 910,375 - +1.3 910,376 + -0.9 910,376 + +0.4 910,376 + -0.6 910,376 + +0.2 910,376 + -0.5 910,377 - -0.9 910,379 - -0.8 910,379 - -0.4 910,551 + ECD_00873 0.11 +0.9 910,552 - ECD_00873 0.11 -0.1 910,628 - ECD_00873 0.18 +0.1 910,836 - ECD_00873 0.39 -0.7 910,836 - ECD_00873 0.39 -0.6 910,839 - ECD_00873 0.39 +0.5 910,902 + ECD_00873 0.45 +1.1 910,903 - ECD_00873 0.45 -0.4 911,001 + ECD_00873 0.55 -2.0 911,130 + ECD_00873 0.68 +0.3 911,278 - ECD_00873 0.82 -1.0 911,558 - -0.8 911,612 + -0.7 911,697 - -1.8 911,764 - ECD_00874 0.15 -0.0 911,771 + ECD_00874 0.15 -2.1 911,772 - ECD_00874 0.15 -0.4 911,772 - ECD_00874 0.15 -0.3 911,772 - ECD_00874 0.15 -1.4 911,836 + ECD_00874 0.20 -0.1 911,836 + ECD_00874 0.20 -1.8 911,868 - ECD_00874 0.22 +0.1 911,868 - ECD_00874 0.22 +0.4 912,237 - ECD_00874 0.48 +0.5 912,237 - ECD_00874 0.48 +1.7 912,402 + ECD_00874 0.59 -1.5
Or see this region's nucleotide sequence