Strain Fitness in Escherichia coli BL21 around ECD_00873

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00871 and ECD_00872 overlap by 4 nucleotidesECD_00872 and ECD_00873 overlap by 4 nucleotidesECD_00873 and ECD_00874 are separated by 98 nucleotides ECD_00871: ECD_00871 - UPF0145 family protein, at 909,297 to 909,620 _00871 ECD_00872: ECD_00872 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein, at 909,617 to 910,447 _00872 ECD_00873: ECD_00873 - putative NAD(P)H-dependent oxidoreductase, at 910,444 to 911,457 _00873 ECD_00874: ECD_00874 - putative NAD-dependent oxidoreductase, at 911,556 to 912,986 _00874 Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1at 909.490 kb on + strand, within ECD_00871at 910.156 kb on - strand, within ECD_00872at 910.254 kb on + strand, within ECD_00872at 910.258 kb on + strand, within ECD_00872at 910.258 kb on + strand, within ECD_00872at 910.262 kb on - strand, within ECD_00872at 910.262 kb on - strand, within ECD_00872at 910.375 kb on - strandat 910.376 kb on + strandat 910.376 kb on + strandat 910.376 kb on + strandat 910.376 kb on + strandat 910.376 kb on + strandat 910.377 kb on - strandat 910.379 kb on - strandat 910.379 kb on - strandat 910.551 kb on + strand, within ECD_00873at 910.552 kb on - strand, within ECD_00873at 910.628 kb on - strand, within ECD_00873at 910.836 kb on - strand, within ECD_00873at 910.836 kb on - strand, within ECD_00873at 910.839 kb on - strand, within ECD_00873at 910.902 kb on + strand, within ECD_00873at 910.903 kb on - strand, within ECD_00873at 911.001 kb on + strand, within ECD_00873at 911.130 kb on + strand, within ECD_00873at 911.278 kb on - strand, within ECD_00873at 911.558 kb on - strandat 911.612 kb on + strandat 911.697 kb on - strandat 911.764 kb on - strand, within ECD_00874at 911.771 kb on + strand, within ECD_00874at 911.772 kb on - strand, within ECD_00874at 911.772 kb on - strand, within ECD_00874at 911.772 kb on - strand, within ECD_00874at 911.836 kb on + strand, within ECD_00874at 911.836 kb on + strand, within ECD_00874at 911.868 kb on - strand, within ECD_00874at 911.868 kb on - strand, within ECD_00874at 912.237 kb on - strand, within ECD_00874at 912.237 kb on - strand, within ECD_00874at 912.402 kb on + strand, within ECD_00874

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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909,490 + ECD_00871 0.60 -0.4
910,156 - ECD_00872 0.65 +0.6
910,254 + ECD_00872 0.77 +0.2
910,258 + ECD_00872 0.77 -0.1
910,258 + ECD_00872 0.77 +0.1
910,262 - ECD_00872 0.78 -0.8
910,262 - ECD_00872 0.78 -2.5
910,375 - +1.3
910,376 + -0.9
910,376 + +0.4
910,376 + -0.6
910,376 + +0.2
910,376 + -0.5
910,377 - -0.9
910,379 - -0.8
910,379 - -0.4
910,551 + ECD_00873 0.11 +0.9
910,552 - ECD_00873 0.11 -0.1
910,628 - ECD_00873 0.18 +0.1
910,836 - ECD_00873 0.39 -0.7
910,836 - ECD_00873 0.39 -0.6
910,839 - ECD_00873 0.39 +0.5
910,902 + ECD_00873 0.45 +1.1
910,903 - ECD_00873 0.45 -0.4
911,001 + ECD_00873 0.55 -2.0
911,130 + ECD_00873 0.68 +0.3
911,278 - ECD_00873 0.82 -1.0
911,558 - -0.8
911,612 + -0.7
911,697 - -1.8
911,764 - ECD_00874 0.15 -0.0
911,771 + ECD_00874 0.15 -2.1
911,772 - ECD_00874 0.15 -0.4
911,772 - ECD_00874 0.15 -0.3
911,772 - ECD_00874 0.15 -1.4
911,836 + ECD_00874 0.20 -0.1
911,836 + ECD_00874 0.20 -1.8
911,868 - ECD_00874 0.22 +0.1
911,868 - ECD_00874 0.22 +0.4
912,237 - ECD_00874 0.48 +0.5
912,237 - ECD_00874 0.48 +1.7
912,402 + ECD_00874 0.59 -1.5

Or see this region's nucleotide sequence