Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00783 and ECD_04299 overlap by 72 nucleotides ECD_04299 and ECD_00784 are separated by 185 nucleotides ECD_00784 and ECD_00785 overlap by 4 nucleotides ECD_00785 and ECD_00786 are separated by 58 nucleotides
ECD_00783: ECD_00783 - hypothetical protein, at 836,663 to 836,932
_00783
ECD_04299: ECD_04299 - Mn(2)-response protein, MntR-repressed, at 836,861 to 836,989
_04299
ECD_00784: ECD_00784 - Mn(2+)-responsive manganese regulon transcriptional regulator, at 837,175 to 837,642
_00784
ECD_00785: ECD_00785 - putative transporter, at 837,639 to 838,757
_00785
ECD_00786: ECD_00786 - L,D-transpeptidase linking Lpp to murein, at 838,816 to 839,736
_00786
Position (kb) 837
838
839 Strain fitness (log2 ratio) -2
-1
0
1 at 836.696 kb on + strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.697 kb on - strand, within ECD_00783 at 836.716 kb on + strand, within ECD_00783 at 836.867 kb on - strand at 836.918 kb on - strand at 836.918 kb on - strand at 836.918 kb on - strand at 836.942 kb on - strand, within ECD_04299 at 836.957 kb on - strand, within ECD_04299 at 836.969 kb on - strand, within ECD_04299 at 836.969 kb on - strand, within ECD_04299 at 836.990 kb on - strand at 837.008 kb on - strand at 837.040 kb on - strand at 837.040 kb on - strand at 837.044 kb on - strand at 837.050 kb on - strand at 837.052 kb on - strand at 837.075 kb on - strand at 837.144 kb on + strand at 837.144 kb on + strand at 837.148 kb on + strand at 837.148 kb on + strand at 837.148 kb on + strand at 837.149 kb on - strand at 837.149 kb on - strand at 837.149 kb on - strand at 837.160 kb on + strand at 837.160 kb on + strand at 837.161 kb on - strand at 837.296 kb on - strand, within ECD_00784 at 837.891 kb on - strand, within ECD_00785 at 837.947 kb on + strand, within ECD_00785 at 837.966 kb on - strand, within ECD_00785 at 838.073 kb on + strand, within ECD_00785 at 838.266 kb on + strand, within ECD_00785 at 838.266 kb on + strand, within ECD_00785 at 838.267 kb on - strand, within ECD_00785 at 838.268 kb on + strand, within ECD_00785 at 838.471 kb on + strand, within ECD_00785 at 838.594 kb on + strand, within ECD_00785 at 838.594 kb on + strand, within ECD_00785 at 838.740 kb on - strand at 838.804 kb on - strand at 838.992 kb on - strand, within ECD_00786 at 838.992 kb on - strand, within ECD_00786 at 839.120 kb on - strand, within ECD_00786 at 839.165 kb on + strand, within ECD_00786 at 839.181 kb on - strand, within ECD_00786 at 839.189 kb on + strand, within ECD_00786 at 839.190 kb on - strand, within ECD_00786 at 839.190 kb on - strand, within ECD_00786 at 839.332 kb on - strand, within ECD_00786 at 839.337 kb on + strand, within ECD_00786 at 839.337 kb on + strand, within ECD_00786 at 839.403 kb on - strand, within ECD_00786 at 839.403 kb on - strand, within ECD_00786 at 839.406 kb on - strand, within ECD_00786 at 839.491 kb on - strand, within ECD_00786 at 839.574 kb on - strand, within ECD_00786 at 839.593 kb on - strand, within ECD_00786 at 839.658 kb on - strand at 839.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 836,696 + ECD_00783 0.12 -0.2 836,697 - ECD_00783 0.13 -0.8 836,697 - ECD_00783 0.13 -0.7 836,697 - ECD_00783 0.13 +0.4 836,716 + ECD_00783 0.20 +0.6 836,867 - +0.5 836,918 - +1.3 836,918 - +1.4 836,918 - +1.2 836,942 - ECD_04299 0.63 +0.7 836,957 - ECD_04299 0.74 +0.5 836,969 - ECD_04299 0.84 -1.4 836,969 - ECD_04299 0.84 +0.7 836,990 - +0.6 837,008 - -0.5 837,040 - +1.1 837,040 - +1.1 837,044 - +0.9 837,050 - +1.6 837,052 - -1.7 837,075 - +0.4 837,144 + +0.9 837,144 + +1.5 837,148 + -0.5 837,148 + +0.9 837,148 + +0.7 837,149 - -1.3 837,149 - -1.0 837,149 - -0.8 837,160 + +0.2 837,160 + +0.2 837,161 - -1.0 837,296 - ECD_00784 0.26 -0.6 837,891 - ECD_00785 0.23 -0.1 837,947 + ECD_00785 0.28 +0.2 837,966 - ECD_00785 0.29 -1.1 838,073 + ECD_00785 0.39 +0.9 838,266 + ECD_00785 0.56 -0.5 838,266 + ECD_00785 0.56 +0.6 838,267 - ECD_00785 0.56 -0.9 838,268 + ECD_00785 0.56 +0.6 838,471 + ECD_00785 0.74 +0.2 838,594 + ECD_00785 0.85 +1.0 838,594 + ECD_00785 0.85 +0.6 838,740 - -0.6 838,804 - +1.0 838,992 - ECD_00786 0.19 +0.3 838,992 - ECD_00786 0.19 +0.3 839,120 - ECD_00786 0.33 +1.6 839,165 + ECD_00786 0.38 -0.2 839,181 - ECD_00786 0.40 -0.8 839,189 + ECD_00786 0.40 -1.4 839,190 - ECD_00786 0.41 +0.1 839,190 - ECD_00786 0.41 -1.2 839,332 - ECD_00786 0.56 +1.1 839,337 + ECD_00786 0.57 -2.0 839,337 + ECD_00786 0.57 -0.5 839,403 - ECD_00786 0.64 -0.3 839,403 - ECD_00786 0.64 -0.2 839,406 - ECD_00786 0.64 -0.8 839,491 - ECD_00786 0.73 +0.7 839,574 - ECD_00786 0.82 +0.3 839,593 - ECD_00786 0.84 +0.9 839,658 - -0.4 839,663 - +0.2
Or see this region's nucleotide sequence