Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00762 and ECD_00763 overlap by 1 nucleotides ECD_00763 and ECD_00764 are separated by 228 nucleotides ECD_00764 and ECD_00765 are separated by 231 nucleotides ECD_00765 and ECD_00766 are separated by 119 nucleotides
ECD_00762: ECD_00762 - putative membrane fusion protein (MFP) component of efflux pump, membrane anchor, at 812,966 to 813,964
_00762
ECD_00763: ECD_00763 - DUF1956 domain-containing tetR family putative transcriptional regulator, at 813,964 to 814,635
_00763
ECD_00764: ECD_00764 - ATP-dependent RNA helicase, at 814,864 to 816,228
_00764
ECD_00765: ECD_00765 - DUF1768 family protein, at 816,460 to 816,942
_00765
ECD_00766: ECD_00766 - ATP-dependent DNA helicase, at 817,062 to 819,212
_00766
Position (kb) 814
815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 813.965 kb on + strand at 813.966 kb on - strand at 814.073 kb on - strand, within ECD_00763 at 814.073 kb on - strand, within ECD_00763 at 814.314 kb on + strand, within ECD_00763 at 814.315 kb on - strand, within ECD_00763 at 814.461 kb on - strand, within ECD_00763 at 814.484 kb on + strand, within ECD_00763 at 814.485 kb on - strand, within ECD_00763 at 814.488 kb on - strand, within ECD_00763 at 814.814 kb on + strand at 814.829 kb on + strand at 814.860 kb on - strand at 814.863 kb on + strand at 814.863 kb on + strand at 814.864 kb on - strand at 814.864 kb on - strand at 814.864 kb on - strand at 815.164 kb on + strand, within ECD_00764 at 815.205 kb on + strand, within ECD_00764 at 815.205 kb on + strand, within ECD_00764 at 815.445 kb on + strand, within ECD_00764 at 815.445 kb on + strand, within ECD_00764 at 815.821 kb on + strand, within ECD_00764 at 815.837 kb on + strand, within ECD_00764 at 815.848 kb on + strand, within ECD_00764 at 815.849 kb on - strand, within ECD_00764 at 816.227 kb on - strand at 816.462 kb on - strand at 816.549 kb on - strand, within ECD_00765 at 816.697 kb on - strand, within ECD_00765 at 817.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 813,965 + -1.5 813,966 - +0.4 814,073 - ECD_00763 0.16 +0.4 814,073 - ECD_00763 0.16 +1.6 814,314 + ECD_00763 0.52 -1.1 814,315 - ECD_00763 0.52 +0.8 814,461 - ECD_00763 0.74 -0.3 814,484 + ECD_00763 0.77 -1.8 814,485 - ECD_00763 0.78 +0.8 814,488 - ECD_00763 0.78 +1.1 814,814 + -0.8 814,829 + +1.3 814,860 - +0.4 814,863 + -1.0 814,863 + -0.1 814,864 - +1.0 814,864 - -1.3 814,864 - -1.4 815,164 + ECD_00764 0.22 +0.7 815,205 + ECD_00764 0.25 +0.5 815,205 + ECD_00764 0.25 -0.7 815,445 + ECD_00764 0.43 +0.5 815,445 + ECD_00764 0.43 +0.8 815,821 + ECD_00764 0.70 +0.8 815,837 + ECD_00764 0.71 +0.5 815,848 + ECD_00764 0.72 +0.3 815,849 - ECD_00764 0.72 -0.3 816,227 - -0.5 816,462 - -1.1 816,549 - ECD_00765 0.18 +0.1 816,697 - ECD_00765 0.49 +0.9 817,107 - +0.0
Or see this region's nucleotide sequence