Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00756 and ECD_00757 overlap by 4 nucleotides ECD_00757 and ECD_00758 are separated by 132 nucleotides ECD_00758 and ECD_00759 overlap by 39 nucleotides
ECD_00756: ECD_00756 - cardiolipin synthase 2, at 806,490 to 807,731
_00756
ECD_00757: ECD_00757 - endo/exonuclease/phosphatase family protein, at 807,728 to 808,489
_00757
ECD_00758: ECD_00758 - inner membrane protein, at 808,622 to 809,032
_00758
ECD_00759: ECD_00759 - putative ABC transporter permease, at 808,994 to 810,100
_00759
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1 at 806.814 kb on - strand, within ECD_00756 at 806.854 kb on - strand, within ECD_00756 at 806.915 kb on - strand, within ECD_00756 at 806.915 kb on - strand, within ECD_00756 at 806.918 kb on + strand, within ECD_00756 at 806.918 kb on + strand, within ECD_00756 at 806.918 kb on + strand, within ECD_00756 at 806.919 kb on - strand, within ECD_00756 at 806.919 kb on - strand, within ECD_00756 at 806.921 kb on - strand, within ECD_00756 at 806.921 kb on - strand, within ECD_00756 at 807.257 kb on + strand, within ECD_00756 at 807.326 kb on + strand, within ECD_00756 at 807.326 kb on + strand, within ECD_00756 at 807.327 kb on - strand, within ECD_00756 at 807.327 kb on - strand, within ECD_00756 at 807.452 kb on - strand, within ECD_00756 at 807.670 kb on + strand at 807.673 kb on + strand at 807.674 kb on - strand at 807.722 kb on + strand at 807.723 kb on - strand at 807.828 kb on + strand, within ECD_00757 at 807.829 kb on - strand, within ECD_00757 at 807.829 kb on - strand, within ECD_00757 at 807.845 kb on + strand, within ECD_00757 at 808.068 kb on - strand, within ECD_00757 at 808.171 kb on - strand, within ECD_00757 at 808.224 kb on + strand, within ECD_00757 at 808.226 kb on + strand, within ECD_00757 at 808.227 kb on - strand, within ECD_00757 at 808.282 kb on - strand, within ECD_00757 at 808.490 kb on - strand at 808.692 kb on + strand, within ECD_00758 at 808.763 kb on + strand, within ECD_00758 at 808.995 kb on + strand at 809.006 kb on - strand at 809.071 kb on + strand at 809.071 kb on + strand at 809.072 kb on - strand at 809.227 kb on + strand, within ECD_00759 at 809.227 kb on + strand, within ECD_00759 at 809.228 kb on - strand, within ECD_00759 at 809.307 kb on - strand, within ECD_00759
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 806,814 - ECD_00756 0.26 +1.2 806,854 - ECD_00756 0.29 +0.5 806,915 - ECD_00756 0.34 -1.1 806,915 - ECD_00756 0.34 +1.1 806,918 + ECD_00756 0.34 -0.6 806,918 + ECD_00756 0.34 -0.9 806,918 + ECD_00756 0.34 -0.8 806,919 - ECD_00756 0.35 +0.2 806,919 - ECD_00756 0.35 +0.7 806,921 - ECD_00756 0.35 -1.3 806,921 - ECD_00756 0.35 -0.5 807,257 + ECD_00756 0.62 +0.5 807,326 + ECD_00756 0.67 -2.3 807,326 + ECD_00756 0.67 -0.2 807,327 - ECD_00756 0.67 -1.1 807,327 - ECD_00756 0.67 -1.4 807,452 - ECD_00756 0.77 +0.1 807,670 + -1.1 807,673 + -0.6 807,674 - -0.6 807,722 + -1.0 807,723 - -0.2 807,828 + ECD_00757 0.13 -0.9 807,829 - ECD_00757 0.13 +0.3 807,829 - ECD_00757 0.13 -2.0 807,845 + ECD_00757 0.15 -1.4 808,068 - ECD_00757 0.45 +0.9 808,171 - ECD_00757 0.58 -1.1 808,224 + ECD_00757 0.65 -1.3 808,226 + ECD_00757 0.65 +1.0 808,227 - ECD_00757 0.65 +1.1 808,282 - ECD_00757 0.73 -1.8 808,490 - -0.1 808,692 + ECD_00758 0.17 +1.7 808,763 + ECD_00758 0.34 -0.3 808,995 + -1.2 809,006 - -0.3 809,071 + +0.4 809,071 + -2.1 809,072 - -1.2 809,227 + ECD_00759 0.21 -0.7 809,227 + ECD_00759 0.21 +0.2 809,228 - ECD_00759 0.21 -1.8 809,307 - ECD_00759 0.28 -0.8
Or see this region's nucleotide sequence