Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00693 and ECD_00694 are separated by 14 nucleotides ECD_00694 and ECD_00695 overlap by 1 nucleotides ECD_00695 and ECD_00696 are separated by 149 nucleotides ECD_00696 and ECD_00697 overlap by 4 nucleotides ECD_00697 and ECD_00698 are separated by 3 nucleotides
ECD_00693: ECD_00693 - cytochrome d terminal oxidase, subunit II, at 731,703 to 732,842
_00693
ECD_00694: ECD_00694 - cytochrome d (bd-I) ubiquinol oxidase subunit X, at 732,857 to 732,970
_00694
ECD_00695: ECD_00695 - putative inner membrane protein in cydABX-ybgE operon, at 732,970 to 733,263
_00695
ECD_00696: ECD_00696 - acyl-CoA thioester hydrolase, at 733,413 to 733,817
_00696
ECD_00697: ECD_00697 - membrane spanning protein in TolA-TolQ-TolR complex, at 733,814 to 734,506
_00697
ECD_00698: ECD_00698 - membrane spanning protein in TolA-TolQ-TolR complex, at 734,510 to 734,938
_00698
Position (kb) 733
734 Strain fitness (log2 ratio) -2
-1
0
1
2 at 732.812 kb on + strand at 732.821 kb on + strand at 732.821 kb on + strand at 732.837 kb on + strand at 732.840 kb on + strand at 732.840 kb on + strand at 732.844 kb on + strand at 732.844 kb on + strand at 733.063 kb on - strand, within ECD_00695 at 733.125 kb on - strand, within ECD_00695 at 733.365 kb on + strand at 733.365 kb on + strand at 733.365 kb on + strand at 733.409 kb on + strand at 733.418 kb on + strand at 733.460 kb on + strand, within ECD_00696 at 733.494 kb on + strand, within ECD_00696 at 733.588 kb on + strand, within ECD_00696 at 733.592 kb on + strand, within ECD_00696 at 733.608 kb on + strand, within ECD_00696 at 733.657 kb on + strand, within ECD_00696 at 733.697 kb on + strand, within ECD_00696 at 733.715 kb on + strand, within ECD_00696
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 732,812 + -1.5 732,821 + -0.9 732,821 + -1.2 732,837 + +1.2 732,840 + +1.4 732,840 + +2.1 732,844 + +2.3 732,844 + +1.4 733,063 - ECD_00695 0.32 -1.8 733,125 - ECD_00695 0.53 -2.5 733,365 + +0.3 733,365 + +0.2 733,365 + +0.9 733,409 + +0.6 733,418 + +0.5 733,460 + ECD_00696 0.12 +1.0 733,494 + ECD_00696 0.20 +0.8 733,588 + ECD_00696 0.43 +0.9 733,592 + ECD_00696 0.44 +0.6 733,608 + ECD_00696 0.48 +0.5 733,657 + ECD_00696 0.60 +0.8 733,697 + ECD_00696 0.70 +0.8 733,715 + ECD_00696 0.75 -0.6
Or see this region's nucleotide sequence