Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00568 and ECD_00569 are separated by 0 nucleotides ECD_00569 and ECD_00570 overlap by 28 nucleotides ECD_00570 and ECD_00571 are separated by 24 nucleotides ECD_00571 and ECD_00572 overlap by 82 nucleotides ECD_00572 and ECD_00573 are separated by 33 nucleotides
ECD_00568: ECD_00568 - methionine aminotransferase, PLP-dependent, at 594,062 to 595,222
_00568
ECD_00569: ECD_00569 - Spo0J family protein, ParB-like nuclease domain, at 595,223 to 595,852
_00569
ECD_00570: ECD_00570 - PAPS reductase-like domain protein, at 595,825 to 596,886
_00570
ECD_00571: ECD_00571 - IS1 protein InsB, at 596,911 to 597,414
_00571
ECD_00572: ECD_00572 - IS1 protein InsA, at 597,333 to 597,608
_00572
ECD_00573: ECD_00573 - thiol:disulfide interchange protein, periplasmic, at 597,642 to 598,403
_00573
Position (kb) 595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 594.843 kb on + strand, within ECD_00568 at 594.843 kb on + strand, within ECD_00568 at 594.868 kb on - strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.903 kb on + strand, within ECD_00568 at 594.904 kb on - strand, within ECD_00568 at 594.904 kb on - strand, within ECD_00568 at 594.944 kb on + strand, within ECD_00568 at 595.015 kb on + strand, within ECD_00568 at 595.015 kb on + strand, within ECD_00568 at 595.047 kb on + strand, within ECD_00568 at 595.221 kb on - strand at 595.282 kb on + strand at 595.451 kb on - strand, within ECD_00569 at 595.491 kb on - strand, within ECD_00569 at 595.567 kb on + strand, within ECD_00569 at 595.736 kb on + strand, within ECD_00569 at 595.736 kb on + strand, within ECD_00569 at 595.840 kb on + strand at 595.841 kb on - strand at 595.841 kb on - strand at 595.882 kb on - strand at 595.883 kb on + strand at 595.952 kb on - strand, within ECD_00570 at 595.963 kb on + strand, within ECD_00570 at 596.055 kb on - strand, within ECD_00570 at 596.123 kb on + strand, within ECD_00570 at 596.137 kb on + strand, within ECD_00570 at 596.235 kb on + strand, within ECD_00570 at 596.268 kb on - strand, within ECD_00570 at 596.345 kb on + strand, within ECD_00570 at 596.350 kb on + strand, within ECD_00570 at 596.350 kb on + strand, within ECD_00570 at 596.358 kb on - strand, within ECD_00570 at 596.404 kb on - strand, within ECD_00570 at 596.445 kb on + strand, within ECD_00570 at 596.499 kb on + strand, within ECD_00570 at 596.531 kb on + strand, within ECD_00570 at 596.532 kb on - strand, within ECD_00570 at 596.823 kb on - strand at 596.823 kb on - strand at 596.823 kb on - strand at 596.826 kb on + strand at 596.827 kb on - strand at 597.681 kb on - strand at 597.723 kb on - strand, within ECD_00573 at 597.740 kb on - strand, within ECD_00573 at 597.740 kb on - strand, within ECD_00573 at 597.742 kb on + strand, within ECD_00573 at 597.742 kb on + strand, within ECD_00573 at 597.819 kb on - strand, within ECD_00573 at 597.822 kb on + strand, within ECD_00573 at 597.823 kb on - strand, within ECD_00573 at 597.840 kb on + strand, within ECD_00573
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 594,843 + ECD_00568 0.67 -1.7 594,843 + ECD_00568 0.67 -0.2 594,868 - ECD_00568 0.69 -0.9 594,903 + ECD_00568 0.72 -0.8 594,903 + ECD_00568 0.72 -0.2 594,903 + ECD_00568 0.72 -1.5 594,903 + ECD_00568 0.72 +0.7 594,904 - ECD_00568 0.73 -0.8 594,904 - ECD_00568 0.73 +0.6 594,944 + ECD_00568 0.76 +0.6 595,015 + ECD_00568 0.82 +0.3 595,015 + ECD_00568 0.82 +1.0 595,047 + ECD_00568 0.85 -1.9 595,221 - -0.6 595,282 + -1.8 595,451 - ECD_00569 0.36 +0.4 595,491 - ECD_00569 0.43 +0.7 595,567 + ECD_00569 0.55 +2.4 595,736 + ECD_00569 0.81 -0.7 595,736 + ECD_00569 0.81 -2.9 595,840 + -0.7 595,841 - -0.5 595,841 - -1.3 595,882 - +0.3 595,883 + -0.8 595,952 - ECD_00570 0.12 +0.0 595,963 + ECD_00570 0.13 +0.2 596,055 - ECD_00570 0.22 +0.3 596,123 + ECD_00570 0.28 -1.0 596,137 + ECD_00570 0.29 -2.3 596,235 + ECD_00570 0.39 -0.6 596,268 - ECD_00570 0.42 -1.8 596,345 + ECD_00570 0.49 -1.2 596,350 + ECD_00570 0.49 -0.1 596,350 + ECD_00570 0.49 -0.5 596,358 - ECD_00570 0.50 -0.7 596,404 - ECD_00570 0.55 -1.3 596,445 + ECD_00570 0.58 -0.3 596,499 + ECD_00570 0.63 -0.7 596,531 + ECD_00570 0.66 +0.8 596,532 - ECD_00570 0.67 -0.6 596,823 - -1.6 596,823 - -1.0 596,823 - +1.4 596,826 + +2.3 596,827 - -0.7 597,681 - +0.5 597,723 - ECD_00573 0.11 +0.6 597,740 - ECD_00573 0.13 -0.1 597,740 - ECD_00573 0.13 -0.3 597,742 + ECD_00573 0.13 -0.7 597,742 + ECD_00573 0.13 +0.3 597,819 - ECD_00573 0.23 -0.2 597,822 + ECD_00573 0.24 -0.3 597,823 - ECD_00573 0.24 +0.3 597,840 + ECD_00573 0.26 -1.7
Or see this region's nucleotide sequence