Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00480 and ECD_00481 are separated by 219 nucleotides ECD_00481 and ECD_00482 are separated by 30 nucleotides ECD_00482 and ECD_00483 are separated by 41 nucleotides
ECD_00480: ECD_00480 - FimA-like protein, at 527,299 to 527,841
_00480
ECD_00481: ECD_00481 - putative periplasmic pilus chaperone, at 528,061 to 528,753
_00481
ECD_00482: ECD_00482 - putative outer membrane export usher protein, at 528,784 to 531,393
_00482
ECD_00483: ECD_00483 - FimA-like protein, at 531,435 to 532,412
_00483
Position (kb) 528
529
530
531
532 Strain fitness (log2 ratio) -2
-1
0
1 at 528.162 kb on + strand, within ECD_00481 at 528.553 kb on - strand, within ECD_00481 at 529.128 kb on + strand, within ECD_00482 at 529.532 kb on + strand, within ECD_00482 at 529.717 kb on + strand, within ECD_00482 at 529.994 kb on + strand, within ECD_00482 at 530.005 kb on + strand, within ECD_00482 at 530.070 kb on - strand, within ECD_00482 at 530.135 kb on - strand, within ECD_00482 at 530.427 kb on + strand, within ECD_00482 at 530.539 kb on - strand, within ECD_00482 at 530.539 kb on - strand, within ECD_00482 at 530.609 kb on - strand, within ECD_00482 at 530.666 kb on + strand, within ECD_00482 at 530.667 kb on - strand, within ECD_00482 at 530.667 kb on - strand, within ECD_00482 at 530.721 kb on + strand, within ECD_00482 at 530.796 kb on + strand, within ECD_00482 at 530.796 kb on + strand, within ECD_00482 at 530.796 kb on + strand, within ECD_00482 at 530.797 kb on - strand, within ECD_00482 at 530.823 kb on + strand, within ECD_00482 at 531.009 kb on + strand, within ECD_00482 at 531.069 kb on + strand, within ECD_00482 at 531.915 kb on + strand, within ECD_00483 at 531.959 kb on + strand, within ECD_00483 at 531.959 kb on + strand, within ECD_00483 at 532.274 kb on + strand, within ECD_00483
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 528,162 + ECD_00481 0.15 -2.7 528,553 - ECD_00481 0.71 +1.6 529,128 + ECD_00482 0.13 -1.5 529,532 + ECD_00482 0.29 -0.1 529,717 + ECD_00482 0.36 +0.5 529,994 + ECD_00482 0.46 -1.0 530,005 + ECD_00482 0.47 -1.2 530,070 - ECD_00482 0.49 -0.6 530,135 - ECD_00482 0.52 -1.7 530,427 + ECD_00482 0.63 -1.4 530,539 - ECD_00482 0.67 -2.1 530,539 - ECD_00482 0.67 -0.4 530,609 - ECD_00482 0.70 -0.6 530,666 + ECD_00482 0.72 -2.4 530,667 - ECD_00482 0.72 +0.0 530,667 - ECD_00482 0.72 -1.1 530,721 + ECD_00482 0.74 +0.4 530,796 + ECD_00482 0.77 -1.0 530,796 + ECD_00482 0.77 -0.2 530,796 + ECD_00482 0.77 -0.1 530,797 - ECD_00482 0.77 +0.9 530,823 + ECD_00482 0.78 -0.8 531,009 + ECD_00482 0.85 -0.2 531,069 + ECD_00482 0.88 -0.5 531,915 + ECD_00483 0.49 -0.8 531,959 + ECD_00483 0.54 -0.9 531,959 + ECD_00483 0.54 -0.1 532,274 + ECD_00483 0.86 -1.1
Or see this region's nucleotide sequence