Strain Fitness in Escherichia coli BL21 around ECD_00431

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00430 and ECD_00431 are separated by 217 nucleotidesECD_00431 and ECD_00432 are separated by 36 nucleotidesECD_00432 and ECD_00433 are separated by 203 nucleotides ECD_00430: ECD_00430 - putative fosmidomycin efflux system protein, at 472,522 to 473,742 _00430 ECD_00431: ECD_00431 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 473,960 to 475,612 _00431 ECD_00432: ECD_00432 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase, at 475,649 to 476,128 _00432 ECD_00433: ECD_00433 - TraB family protein, at 476,332 to 477,126 _00433 Position (kb) 473 474 475 476Strain fitness (log2 ratio) -2 -1 0 1at 472.964 kb on - strand, within ECD_00430at 473.018 kb on + strand, within ECD_00430at 473.065 kb on + strand, within ECD_00430at 473.066 kb on - strand, within ECD_00430at 473.289 kb on + strand, within ECD_00430at 473.290 kb on - strand, within ECD_00430at 473.440 kb on + strand, within ECD_00430at 473.440 kb on + strand, within ECD_00430at 473.519 kb on - strand, within ECD_00430at 473.548 kb on + strand, within ECD_00430at 473.566 kb on - strand, within ECD_00430at 473.773 kb on - strandat 473.811 kb on + strandat 473.811 kb on + strandat 473.811 kb on + strandat 473.811 kb on + strandat 473.812 kb on - strandat 473.812 kb on - strandat 473.861 kb on + strandat 473.904 kb on - strandat 473.919 kb on - strandat 473.921 kb on + strandat 473.922 kb on - strandat 473.959 kb on + strandat 473.959 kb on + strandat 473.960 kb on - strandat 474.008 kb on - strandat 474.074 kb on - strandat 474.240 kb on + strand, within ECD_00431at 474.284 kb on + strand, within ECD_00431at 474.382 kb on + strand, within ECD_00431at 474.506 kb on + strand, within ECD_00431at 474.506 kb on + strand, within ECD_00431at 474.592 kb on + strand, within ECD_00431at 474.620 kb on + strand, within ECD_00431at 474.620 kb on + strand, within ECD_00431at 474.840 kb on - strand, within ECD_00431at 475.005 kb on + strand, within ECD_00431at 475.217 kb on + strand, within ECD_00431at 475.263 kb on - strand, within ECD_00431at 475.447 kb on - strandat 475.519 kb on + strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.650 kb on + strandat 475.749 kb on + strand, within ECD_00432at 475.753 kb on + strand, within ECD_00432at 476.168 kb on + strandat 476.169 kb on - strandat 476.213 kb on + strandat 476.275 kb on - strandat 476.275 kb on - strandat 476.375 kb on - strandat 476.375 kb on - strandat 476.375 kb on - strandat 476.375 kb on - strandat 476.396 kb on + strandat 476.396 kb on + strandat 476.397 kb on - strandat 476.465 kb on + strand, within ECD_00433at 476.485 kb on - strand, within ECD_00433at 476.497 kb on + strand, within ECD_00433at 476.497 kb on + strand, within ECD_00433at 476.498 kb on - strand, within ECD_00433at 476.498 kb on - strand, within ECD_00433at 476.498 kb on - strand, within ECD_00433at 476.498 kb on - strand, within ECD_00433at 476.499 kb on + strand, within ECD_00433at 476.499 kb on + strand, within ECD_00433at 476.500 kb on - strand, within ECD_00433at 476.500 kb on - strand, within ECD_00433at 476.506 kb on - strand, within ECD_00433

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
remove
472,964 - ECD_00430 0.36 -1.5
473,018 + ECD_00430 0.41 -0.9
473,065 + ECD_00430 0.44 -2.1
473,066 - ECD_00430 0.45 +0.1
473,289 + ECD_00430 0.63 -1.1
473,290 - ECD_00430 0.63 -1.5
473,440 + ECD_00430 0.75 +0.9
473,440 + ECD_00430 0.75 -0.0
473,519 - ECD_00430 0.82 +1.2
473,548 + ECD_00430 0.84 -0.5
473,566 - ECD_00430 0.86 +0.2
473,773 - -1.8
473,811 + +0.0
473,811 + -1.1
473,811 + +0.0
473,811 + +0.3
473,812 - +0.0
473,812 - +1.0
473,861 + +0.2
473,904 - -1.0
473,919 - -1.4
473,921 + -1.6
473,922 - -0.8
473,959 + -1.2
473,959 + -0.2
473,960 - -2.5
474,008 - -2.3
474,074 - -0.1
474,240 + ECD_00431 0.17 -1.3
474,284 + ECD_00431 0.20 -1.3
474,382 + ECD_00431 0.26 -1.4
474,506 + ECD_00431 0.33 -0.4
474,506 + ECD_00431 0.33 +0.1
474,592 + ECD_00431 0.38 +0.6
474,620 + ECD_00431 0.40 +0.8
474,620 + ECD_00431 0.40 +1.1
474,840 - ECD_00431 0.53 -0.4
475,005 + ECD_00431 0.63 -2.3
475,217 + ECD_00431 0.76 +0.4
475,263 - ECD_00431 0.79 -0.3
475,447 - -1.3
475,519 + +0.1
475,545 - +0.8
475,545 - -1.6
475,650 + +0.4
475,749 + ECD_00432 0.21 -2.1
475,753 + ECD_00432 0.22 -1.1
476,168 + +0.2
476,169 - +0.1
476,213 + +0.7
476,275 - -0.3
476,275 - +0.5
476,375 - +1.6
476,375 - +0.4
476,375 - -0.4
476,375 - -0.3
476,396 + -0.3
476,396 + -1.1
476,397 - +0.8
476,465 + ECD_00433 0.17 +0.3
476,485 - ECD_00433 0.19 -0.3
476,497 + ECD_00433 0.21 -1.1
476,497 + ECD_00433 0.21 +0.7
476,498 - ECD_00433 0.21 -0.5
476,498 - ECD_00433 0.21 +0.1
476,498 - ECD_00433 0.21 -0.3
476,498 - ECD_00433 0.21 -0.6
476,499 + ECD_00433 0.21 -0.1
476,499 + ECD_00433 0.21 -0.6
476,500 - ECD_00433 0.21 +0.5
476,500 - ECD_00433 0.21 +1.1
476,506 - ECD_00433 0.22 +0.2

Or see this region's nucleotide sequence