Strain Fitness in Escherichia coli BL21 around ECD_00417

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00416 and ECD_00417 are separated by 211 nucleotidesECD_00417 and ECD_00418 are separated by 13 nucleotidesECD_00418 and ECD_00419 are separated by 69 nucleotides ECD_00416: ECD_00416 - mechanosensitive channel protein, intermediate conductance, K+ regulated, at 455,582 to 458,944 _00416 ECD_00417: ECD_00417 - DUF2496 family protein, at 459,156 to 459,317 _00417 ECD_00418: ECD_00418 - primosomal replication protein N'', at 459,331 to 459,858 _00418 ECD_00419: ECD_00419 - DUF454 family inner membrane protein, at 459,928 to 460,305 _00419 Position (kb) 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 458.229 kb on - strand, within ECD_00416at 458.236 kb on + strand, within ECD_00416at 458.237 kb on - strand, within ECD_00416at 458.237 kb on - strand, within ECD_00416at 458.237 kb on - strand, within ECD_00416at 458.239 kb on + strand, within ECD_00416at 458.239 kb on + strand, within ECD_00416at 458.239 kb on + strand, within ECD_00416at 458.248 kb on + strand, within ECD_00416at 458.248 kb on + strand, within ECD_00416at 458.252 kb on + strand, within ECD_00416at 458.252 kb on + strand, within ECD_00416at 458.260 kb on + strand, within ECD_00416at 458.344 kb on - strand, within ECD_00416at 458.446 kb on + strand, within ECD_00416at 458.463 kb on + strand, within ECD_00416at 458.463 kb on + strand, within ECD_00416at 458.467 kb on + strand, within ECD_00416at 458.468 kb on - strand, within ECD_00416at 458.468 kb on - strand, within ECD_00416at 458.468 kb on - strand, within ECD_00416at 458.578 kb on + strand, within ECD_00416at 458.750 kb on + strandat 458.750 kb on + strandat 458.751 kb on - strandat 458.780 kb on - strandat 458.965 kb on + strandat 459.059 kb on + strandat 459.076 kb on - strandat 459.127 kb on - strandat 459.137 kb on + strandat 459.138 kb on - strandat 459.151 kb on - strandat 459.184 kb on - strand, within ECD_00417at 459.207 kb on + strand, within ECD_00417at 459.207 kb on + strand, within ECD_00417at 459.208 kb on - strand, within ECD_00417at 459.208 kb on - strand, within ECD_00417at 459.317 kb on + strandat 459.317 kb on + strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.318 kb on - strandat 459.522 kb on + strand, within ECD_00418at 459.522 kb on + strand, within ECD_00418at 459.528 kb on + strand, within ECD_00418at 459.889 kb on - strandat 459.928 kb on - strandat 459.944 kb on + strandat 459.945 kb on - strandat 460.103 kb on - strand, within ECD_00419at 460.103 kb on - strand, within ECD_00419at 460.106 kb on + strand, within ECD_00419at 460.106 kb on + strand, within ECD_00419at 460.106 kb on + strand, within ECD_00419at 460.106 kb on + strand, within ECD_00419at 460.106 kb on + strand, within ECD_00419at 460.106 kb on + strand, within ECD_00419at 460.258 kb on + strand, within ECD_00419at 460.258 kb on + strand, within ECD_00419at 460.258 kb on + strand, within ECD_00419at 460.259 kb on - strand, within ECD_00419at 460.259 kb on - strand, within ECD_00419at 460.261 kb on - strand, within ECD_00419at 460.261 kb on - strand, within ECD_00419at 460.261 kb on - strand, within ECD_00419

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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458,229 - ECD_00416 0.79 +0.7
458,236 + ECD_00416 0.79 -0.8
458,237 - ECD_00416 0.79 -0.9
458,237 - ECD_00416 0.79 -1.3
458,237 - ECD_00416 0.79 -0.3
458,239 + ECD_00416 0.79 -1.9
458,239 + ECD_00416 0.79 -0.0
458,239 + ECD_00416 0.79 -0.7
458,248 + ECD_00416 0.79 -0.2
458,248 + ECD_00416 0.79 +0.2
458,252 + ECD_00416 0.79 -0.1
458,252 + ECD_00416 0.79 -0.4
458,260 + ECD_00416 0.80 +1.0
458,344 - ECD_00416 0.82 -1.2
458,446 + ECD_00416 0.85 +0.2
458,463 + ECD_00416 0.86 +0.1
458,463 + ECD_00416 0.86 -0.8
458,467 + ECD_00416 0.86 +0.1
458,468 - ECD_00416 0.86 -0.0
458,468 - ECD_00416 0.86 +1.6
458,468 - ECD_00416 0.86 -2.5
458,578 + ECD_00416 0.89 -0.1
458,750 + -1.5
458,750 + +0.5
458,751 - +0.1
458,780 - +0.9
458,965 + -0.2
459,059 + -1.0
459,076 - -0.8
459,127 - +0.2
459,137 + -2.5
459,138 - +0.4
459,151 - +0.8
459,184 - ECD_00417 0.17 +0.0
459,207 + ECD_00417 0.31 +0.7
459,207 + ECD_00417 0.31 +0.7
459,208 - ECD_00417 0.32 +1.2
459,208 - ECD_00417 0.32 +1.1
459,317 + +0.6
459,317 + +0.5
459,318 - +1.7
459,318 - +0.9
459,318 - +1.6
459,318 - +1.9
459,318 - +1.5
459,522 + ECD_00418 0.36 +0.2
459,522 + ECD_00418 0.36 +0.1
459,528 + ECD_00418 0.37 +0.6
459,889 - -0.6
459,928 - +0.2
459,944 + +1.0
459,945 - +0.5
460,103 - ECD_00419 0.46 +0.8
460,103 - ECD_00419 0.46 -0.2
460,106 + ECD_00419 0.47 -0.2
460,106 + ECD_00419 0.47 +1.4
460,106 + ECD_00419 0.47 -0.5
460,106 + ECD_00419 0.47 +0.6
460,106 + ECD_00419 0.47 +1.8
460,106 + ECD_00419 0.47 -0.5
460,258 + ECD_00419 0.87 -1.3
460,258 + ECD_00419 0.87 +0.4
460,258 + ECD_00419 0.87 -0.4
460,259 - ECD_00419 0.88 +1.5
460,259 - ECD_00419 0.88 -0.1
460,261 - ECD_00419 0.88 +1.3
460,261 - ECD_00419 0.88 -0.2
460,261 - ECD_00419 0.88 +0.4

Or see this region's nucleotide sequence