Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00404 and ECD_00405 are separated by 217 nucleotides ECD_00405 and ECD_00406 are separated by 30 nucleotides ECD_00406 and ECD_00407 are separated by 300 nucleotides ECD_00407 and ECD_00408 are separated by 41 nucleotides
ECD_00404: ECD_00404 - acyl-CoA thioesterase 2, at 443,347 to 444,207
_00404
ECD_00405: ECD_00405 - outer membrane lipoprotein, at 444,425 to 444,997
_00405
ECD_00406: ECD_00406 - excision repair protein, alkyltransferase-like protein ATL, at 445,028 to 445,417
_00406
ECD_00407: ECD_00407 - DUF1428 family protein, at 445,718 to 446,071
_00407
ECD_00408: ECD_00408 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 446,113 to 447,663
_00408
Position (kb) 445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 444.037 kb on + strand, within ECD_00404 at 444.075 kb on - strand, within ECD_00404 at 444.116 kb on - strand, within ECD_00404 at 444.173 kb on - strand at 444.207 kb on + strand at 444.207 kb on + strand at 444.208 kb on - strand at 444.210 kb on - strand at 444.256 kb on + strand at 444.257 kb on - strand at 444.292 kb on + strand at 444.314 kb on - strand at 444.357 kb on + strand at 444.488 kb on - strand, within ECD_00405 at 444.556 kb on + strand, within ECD_00405 at 444.811 kb on - strand, within ECD_00405 at 444.815 kb on - strand, within ECD_00405 at 445.029 kb on + strand at 445.032 kb on + strand at 445.033 kb on - strand at 445.119 kb on - strand, within ECD_00406 at 445.264 kb on - strand, within ECD_00406 at 445.276 kb on - strand, within ECD_00406 at 445.289 kb on - strand, within ECD_00406 at 445.368 kb on + strand, within ECD_00406 at 445.697 kb on + strand at 445.698 kb on - strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.711 kb on - strand at 445.711 kb on - strand at 445.724 kb on + strand at 445.724 kb on + strand at 445.725 kb on - strand at 445.725 kb on - strand at 445.828 kb on + strand, within ECD_00407 at 445.855 kb on - strand, within ECD_00407 at 446.069 kb on + strand at 446.069 kb on + strand at 446.186 kb on + strand at 446.187 kb on - strand at 446.283 kb on + strand, within ECD_00408 at 446.304 kb on - strand, within ECD_00408 at 446.405 kb on + strand, within ECD_00408
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1 remove 444,037 + ECD_00404 0.80 -2.5 444,075 - ECD_00404 0.85 -0.7 444,116 - ECD_00404 0.89 +0.1 444,173 - -0.8 444,207 + -1.0 444,207 + -0.5 444,208 - +1.4 444,210 - -1.4 444,256 + -0.9 444,257 - -1.5 444,292 + +0.3 444,314 - -0.6 444,357 + +0.2 444,488 - ECD_00405 0.11 -0.5 444,556 + ECD_00405 0.23 -0.9 444,811 - ECD_00405 0.67 -1.2 444,815 - ECD_00405 0.68 -0.9 445,029 + -0.0 445,032 + -1.1 445,033 - +0.5 445,119 - ECD_00406 0.23 +0.7 445,264 - ECD_00406 0.61 +2.0 445,276 - ECD_00406 0.64 +1.0 445,289 - ECD_00406 0.67 -0.4 445,368 + ECD_00406 0.87 +0.9 445,697 + +1.4 445,698 - -1.4 445,710 + +2.3 445,710 + +0.5 445,711 - -1.3 445,711 - -0.0 445,724 + -0.3 445,724 + -0.3 445,725 - +0.6 445,725 - -1.2 445,828 + ECD_00407 0.31 -1.5 445,855 - ECD_00407 0.39 -0.9 446,069 + -0.0 446,069 + -0.3 446,186 + -0.6 446,187 - -0.1 446,283 + ECD_00408 0.11 +0.3 446,304 - ECD_00408 0.12 +1.0 446,405 + ECD_00408 0.19 -0.7
Or see this region's nucleotide sequence