Strain Fitness in Escherichia coli BL21 around ECD_00366

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00365 and ECD_00366 overlap by 23 nucleotidesECD_00366 and ECD_00367 are separated by 53 nucleotides ECD_00365: ECD_00365 - thiamine monophosphate kinase, at 401,035 to 402,012 _00365 ECD_00366: ECD_00366 - phosphatidylglycerophosphatase A, at 401,990 to 402,508 _00366 ECD_00367: ECD_00367 - 2-carboxybenzaldehyde reductase, at 402,562 to 403,536 _00367 Position (kb) 401 402 403Strain fitness (log2 ratio) -2 -1 0 1 2 3at 401.034 kb on + strandat 402.043 kb on + strand, within ECD_00366at 402.043 kb on + strand, within ECD_00366at 402.057 kb on + strand, within ECD_00366at 402.084 kb on + strand, within ECD_00366at 402.137 kb on + strand, within ECD_00366at 402.206 kb on + strand, within ECD_00366at 402.507 kb on - strandat 402.682 kb on - strand, within ECD_00367at 402.933 kb on - strand, within ECD_00367at 403.099 kb on + strand, within ECD_00367at 403.179 kb on - strand, within ECD_00367at 403.360 kb on - strand, within ECD_00367at 403.360 kb on - strand, within ECD_00367

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_1
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401,034 + +3.0
402,043 + ECD_00366 0.10 -1.9
402,043 + ECD_00366 0.10 -2.4
402,057 + ECD_00366 0.13 -2.1
402,084 + ECD_00366 0.18 -0.6
402,137 + ECD_00366 0.28 -0.8
402,206 + ECD_00366 0.42 -2.5
402,507 - -0.1
402,682 - ECD_00367 0.12 -0.6
402,933 - ECD_00367 0.38 -1.0
403,099 + ECD_00367 0.55 -0.9
403,179 - ECD_00367 0.63 -1.8
403,360 - ECD_00367 0.82 -1.1
403,360 - ECD_00367 0.82 -0.3

Or see this region's nucleotide sequence